Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90676g00014 ATGGCAGAAAGTACAAGGAAAGTTGAACTTATTTTCTTGGTTACTTTTGCCATTGTTATTCCATGCCTTGAGGCTGGAATTGCTGTATATGATGATTTTCTCAAAGCACAAGCTGAGATGGCCCATGAAATTGCTCTTGAGTCATTCGTCCCTAATCCCATGAATATTACCTCCGAGCTCAACCTCCATGTTCATTTGGCAATGGAGGAAGAATCAAACATGACAAGGAGGAATCTAAGGGAAGGGCGTGCACATAATGCAAATGAACCATGCGAGGCCAGTAACCCTATTGACCGTTGCTGGAGGTGCCGAGCTGATTGGGCCGAAAACCGCCAAAAGTTGGCCAAATGTGTCAAGGGTTTCGGACGTAGGGCCGTCGGAGGACTCGGTGGGCCCACCTATGTAGTCACCGAAGATACCGACGAAAATTTAGTAGACCCTAAGCCCGGAACCCTAAGACATGCGGTCACTCGCAATGGACCCTTGTGGATCATCTTTGCACGTAGCATGATCATTAAGTTGCAACAAGAATTGTTGGTTTCCTCCGACAAGACCATCGACGGCCGCGGCGCCAATGTACAGATTAGGGACGGCGCCGGCATCACAATGCAATTCGTGAACAATGTCATCGTCCATGGCCTCCGCGTCAAGAAGGTGAAGGCCATGGAAGGTGGCATGATTAGGGACTCTTATAACCATGTAGGTCAAAGAACAAGGAGTGATGGCGATGGTATCTCCATCTTCGGATCCTCTAACATTTGGGTTGATCACATTTCCATGTCCGAGTGTGACGATGGCCTTGTTGATGTTATCCAAGGTTCCACTGCTATCACCATCTCCAATTGCCACATGACCAAACACAACGACGTGATGTTGTTCGGAGCAAGTGATTCCTACACCGGGGACAAGATCATGCAGATCACCGTGGCGTTCAACCACTTCGGACAAGGATTGATCCAGAGGATGCCAAGGTGCAGATGGGGATTCTTCCATGTGTTGAACAATGACTACACTCACTGGCTGATGTACGCCATTGGAGGAAGCTCAGGGCCAACAATTCTGAGCCAAGGAAACCGTTTCATTGCACCGAACAATGAAGCTGCAAAAGAAATCACACACAGAGACTATGCACCAAAAGAGACATGGTCAAAATGGCAATGGACTTCAGATAATGACCTGTTCATGAATGGTGCCAAGTTTACTCAATCTGGCCAACCAATTACTAAGCTGGAAAATATCAACAAGGGTTTGATAATGAAGCCAAGACCTGGTAGCCATGCTAATAGGCTAACTAAGCATGCTGGTGCTCTTGGTTGTGTTGTAGGCAAACCTTGCTAG 1338 0.4746 MAESTRKVELIFLVTFAIVIPCLEAGIAVYDDFLKAQAEMAHEIALESFVPNPMNITSELNLHVHLAMEEESNMTRRNLREGRAHNANEPCEASNPIDRCWRCRADWAENRQKLAKCVKGFGRRAVGGLGGPTYVVTEDTDENLVDPKPGTLRHAVTRNGPLWIIFARSMIIKLQQELLVSSDKTIDGRGANVQIRDGAGITMQFVNNVIVHGLRVKKVKAMEGGMIRDSYNHVGQRTRSDGDGISIFGSSNIWVDHISMSECDDGLVDVIQGSTAITISNCHMTKHNDVMLFGASDSYTGDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNEAAKEITHRDYAPKETWSKWQWTSDNDLFMNGAKFTQSGQPITKLENINKGLIMKPRPGSHANRLTKHAGALGCVVGKPC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90676g00014 445 PANTHER PECTATE LYASE 18-RELATED 42 443 IPR045032 GO:0030570
Stsc90676g00014 445 Pfam Pectate lyase 176 360 IPR002022 -
Stsc90676g00014 445 SUPERFAMILY Pectin lyase-like 95 436 IPR011050 -
Stsc90676g00014 445 Gene3D - 94 438 IPR012334 -
Stsc90676g00014 445 Pfam Pectate lyase, N terminus 27 79 IPR007524 GO:0030570
Stsc90676g00014 445 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Stsc90676g00014 445 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Stsc90676g00014 445 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Stsc90676g00014 445 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Stsc90676g00014 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Stsc90676g00014 445 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Stsc90676g00014 445 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Stsc90676g00014 445 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Stsc90676g00014 445 SMART amb_all 169 366 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90676g00014 Stsc-Chr90676 97996 100436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90676g00014 10 445 Polysaccharide Lyase AT1G14420 56.667 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90676g00014 K01728 - gmx:100780236 672.93