Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90676g00007 ATGGGGTTTGAGAATAATGCAATTAAAGCAGGGAGTTTGGATGTTGGAAAGTCAAAGGGAGGGAAGAAGAAGAAGAAGAAGAATAGAGATGGTGATGGTGATGAGAGTGGGTGTTGCCTTAGATTGAGTTTCATTGGAAGTTGCATACCTTCAAGATCAAAGGTTGATAACTCCATAAGTGGCACCACAACTAGTGCTCATAGTGTATATAAAGCATCTGCATATGAGAGAAGCAAAAGAGAAGCAAGTGCTGCACCAGAGTCCTCAACAACAACTAGTAATGCTGGAAGTGTCCCTTCCACTCCGAAGTTCAGCGAGGAGTTGAAGGTTTCTTCTCGGTTGAGAAAATTCACCTTCAATGAGCTTAAGATGGCAACTAGGAACTTCAAACCAGAGAGTCTTCTTGGCGAGGGAGGGTTCGGTTGTGTCTTCAAGGGTTGGATTGAGGAGAACGGAACTGCGCCTGTGAGACCGGGGACGGGTCTTACTGTTGCAGTCAAGACCCTTAACCATGATGGACTTCAGGGCCACAAAGAGTGGCTTGCTGAGTTAAACATTCTTGGTGATCTTGTCCATCCTAATCTTGTCAAATTGATTGGTTTCTGCATTGAAGATGATCAAAGATTATTGGTTTACGAGTTTATGCCCCGAGGAAGTTTGGAGAACCATCTCTTTAGAAGGTCTATGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTGCTTTTCTGCATGAAGAAGCTCAGAGGCCCGTAATCTATCGTGATTTCAAGACATCTAACATACTATTAGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCCGAAGGGGAGAAGACACACATATCTACAAGAGTTATGGGAACATATGGCTATGCTGCTCCTGAGTATGTGATGACGGGACATTTGACGACGAAAAGTGATGTCTATAGTTTCGGAGTAGTGCTACTGGAAATGCTCACTGGCCGCAGATCTATTGATAAGAACAGACCAAATGGGGAACACAATCTTGTGGAGTGGGCAAGGCCTTTTATCTTAGACCGAAGAATGTTCTATCGGATAATTGATCATCGCCTCGAGGGCCACTTCTCCATTAAAGGTGCACAAAAAGCCGCCCAGCTAGCAGCTCAGTGCCTTGCCCGCGATCCAAAATCCAGACCTATGATGAGTGAAGTCGTTCAAGTTCTAAAGCCTGTACAGAACCTCAAGGACATGGCCATCGCGTCTCGCCACTTCCAGTTTGTGCGAGTTGATCGTACCATGTCAATGCCGAATCCTAAAAACGGCATGCAAACACAACTAGGATCATTTTCAAGGAAGGGTCAACCTGTAAGGACCTTGTCAAGTCCAAGGGGTCCACCTGGTTCTCCATTTCATCATCATAGCAAGTCTCCAAAACCTAATGGATAA 1449 0.45 MGFENNAIKAGSLDVGKSKGGKKKKKKNRDGDGDESGCCLRLSFIGSCIPSRSKVDNSISGTTTSAHSVYKASAYERSKREASAAPESSTTTSNAGSVPSTPKFSEELKVSSRLRKFTFNELKMATRNFKPESLLGEGGFGCVFKGWIEENGTAPVRPGTGLTVAVKTLNHDGLQGHKEWLAELNILGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRSMPLPWSIRMKIALGAAKGLAFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTTKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPFILDRRMFYRIIDHRLEGHFSIKGAQKAAQLAAQCLARDPKSRPMMSEVVQVLKPVQNLKDMAIASRHFQFVRVDRTMSMPNPKNGMQTQLGSFSRKGQPVRTLSSPRGPPGSPFHHHSKSPKPNG 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90676g00007 482 MobiDBLite consensus disorder prediction 437 458 - -
Stsc90676g00007 482 Pfam Protein kinase domain 131 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90676g00007 482 FunFam Serine/threonine-protein kinase BIK1 96 214 - -
Stsc90676g00007 482 MobiDBLite consensus disorder prediction 84 104 - -
Stsc90676g00007 482 PANTHER OS01G0588500 PROTEIN-RELATED 85 413 - -
Stsc90676g00007 482 ProSitePatterns Protein kinases ATP-binding region signature. 135 167 IPR017441 GO:0005524
Stsc90676g00007 482 FunFam Probable serine/threonine-protein kinase PBL8 215 428 - -
Stsc90676g00007 482 ProSiteProfiles Protein kinase domain profile. 129 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90676g00007 482 CDD STKc_IRAK 135 411 - -
Stsc90676g00007 482 MobiDBLite consensus disorder prediction 1 37 - -
Stsc90676g00007 482 Gene3D Phosphorylase Kinase; domain 1 108 214 - -
Stsc90676g00007 482 MobiDBLite consensus disorder prediction 434 482 - -
Stsc90676g00007 482 Gene3D Transferase(Phosphotransferase) domain 1 215 431 - -
Stsc90676g00007 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Stsc90676g00007 482 MobiDBLite consensus disorder prediction 77 104 - -
Stsc90676g00007 482 SUPERFAMILY Protein kinase-like (PK-like) 103 409 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90676g00007 Stsc-Chr90676 52002 55580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90676g00007 77 425 Glycoside Hydrolase AT3G07070 50.704 5.11e-114 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc90676g00007 Pkinase 5.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90676g00007 - - gmx:100305393 795.808