Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90675g00022 ATGAAGTCTCAGCTCAAAGTTGCTGCTGTTCTTGCCATTAGCTTGCTCTGGATTCAGCACTCATTTTGTGATGAACCTTCTGAAACTTACCTAAACAAGTGGAAATGTAGATGTTCTTCTTTACAAAGAAACCATGAATACTCTCTTTATAATTGTTCTCAGTCATGTGATTGCCATTATTCAGATGCTGCAGATAATGAATCCATATGGACATGCATATGTGATAGCAATGGATTCCCTAAAGTAGCAGCAGGTGGCCATGGCTCTAGCTGCTTTAAATCCTGCAACTGCACCTGGGGTATTGCCTTGTTACAAAAGTCATTTGAAGATCAAGTAATGAACACTCTTGCATTTCTTGCCTCATTTCTATACTATATCTGCCGAAGAGATCGCTGTCCGATTATATCACCAATCATTTTATCAGATAAAGAAACAAGTTACAATAGTACCTCCAATTTAATTAGTCATAGAACATCTTCAGTTCCAGTGAGTCATATTGCAGGATGCTTTCAGAAGGCCTCTTTCTTGTTTGGGAGCCATAGAGAAACTTTTCATGGAAGTATCATTCGATTTTCGTTCTCTGAGCTGGAAAATGCCACTGGAAACTTCTCAACTTCCAACATAATTGGACTTGGTGGAAGTAGTTATGTATACCGCGGTAGACTTAAAGATGGAAGTAGTGTGGCGGTTAAGCGATTGAAAGATCAAGGAGGACCTGAAGCAGACACTGAATTTTTCACAGAGATTGAACTATTGTCTAGGCTTCATCATTGTCATCTGGTGCCATTGCTTGGATACTGCTCAGAATTAAAAGGGAAAAATGTTCATAGGTTACTAGTGTTTGAGTACATGCCTAATGGGAATTTGAGGGACCGTTTGGATGGAGTTTTTGGGAAGAACATGGATTGGTCTACTCGTGTAAATATCGCATTGGGAGCTGCCAGGGGTTTGGAGTATCTCCATGAAGCAGCTGCTCCAAGAATTCTGCATAGAGATGTCAAGTCAACCAACATTCTTCTTGATGAAAATTGGCATGCAAAGATAACTGATCTTGGTATGGCTAAAAACTTGATAGCTGATGACATACTCAGTTGTCCTGACTCTCCAGAAAGAATGCAAGGGACATTTGGCTATTTCGCACCCGAGTATGCCATAGTTGGTAGAGCTTCTCTTGAATCTGATGTATTCAGTTTTGGTGTGGTTCTTCTTGAGCTTATCAGCGGCCGCCAACCAATCCTTAGAACTTCAGGCAGAGAAGAAAGCCTTGTTATATGGGCTACTCCTCTCTTGCAAGAGAGCAGGAGAGTAATGGCAGAGTTTATCGATCCGCGGTTGAGAGGAAACTTCCCAGAAGAAGAGGTGCTGGTAATGGCATACTTAGCAAAAGAGTGTTTGCTGTTGGATCCTGACTCAAGACCAACCATGAGTGAGGTTGTTCAAATTCTTTCAAGTATTTCTCCAGGCAAATCTAGAAGAAGAATAAGCATTCCACTTAGCCTTTTTCAGGAATCAGAGGATGCAGAGAAGCCAAGGCAATCCTCATCGGCCACATTTGCTTCTTGTAATTTCATATCACAAGATACTGAAAACAATGAAAATAAGAATGTAGATGCATTTTCACCCGAGTATATGGAGAGTTTGATCCTCTTGACTTCAAAAATTCCTGAGATCAGCTGGCATGCATCAGAAGAGGAAATGGTAGACCTAACCGAGCCTCGGTTCGAGTCGTTTTGTGTGACTAGTGTCGAATTTCCATGA 1758 0.4118 MKSQLKVAAVLAISLLWIQHSFCDEPSETYLNKWKCRCSSLQRNHEYSLYNCSQSCDCHYSDAADNESIWTCICDSNGFPKVAAGGHGSSCFKSCNCTWGIALLQKSFEDQVMNTLAFLASFLYYICRRDRCPIISPIILSDKETSYNSTSNLISHRTSSVPVSHIAGCFQKASFLFGSHRETFHGSIIRFSFSELENATGNFSTSNIIGLGGSSYVYRGRLKDGSSVAVKRLKDQGGPEADTEFFTEIELLSRLHHCHLVPLLGYCSELKGKNVHRLLVFEYMPNGNLRDRLDGVFGKNMDWSTRVNIALGAARGLEYLHEAAAPRILHRDVKSTNILLDENWHAKITDLGMAKNLIADDILSCPDSPERMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPILRTSGREESLVIWATPLLQESRRVMAEFIDPRLRGNFPEEEVLVMAYLAKECLLLDPDSRPTMSEVVQILSSISPGKSRRRISIPLSLFQESEDAEKPRQSSSATFASCNFISQDTENNENKNVDAFSPEYMESLILLTSKIPEISWHASEEEMVDLTEPRFESFCVTSVEFP 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90675g00022 585 FunFam receptor-like serine/threonine-protein kinase NCRK 284 494 - -
Stsc90675g00022 585 SMART serkin_6 203 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90675g00022 585 CDD STKc_IRAK 209 485 - -
Stsc90675g00022 585 PANTHER OS01G0750732 PROTEIN 125 504 - -
Stsc90675g00022 585 FunFam receptor-like serine/threonine-protein kinase NCRK 177 283 - -
Stsc90675g00022 585 Gene3D Phosphorylase Kinase; domain 1 178 283 - -
Stsc90675g00022 585 Gene3D Transferase(Phosphotransferase) domain 1 284 496 - -
Stsc90675g00022 585 Pfam Protein kinase domain 204 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90675g00022 585 ProSitePatterns Protein kinases ATP-binding region signature. 209 231 IPR017441 GO:0005524
Stsc90675g00022 585 ProSiteProfiles Protein kinase domain profile. 203 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90675g00022 585 SUPERFAMILY Protein kinase-like (PK-like) 183 482 IPR011009 -
Stsc90675g00022 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 328 340 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90675g00022 Stsc-Chr90675 159126 161871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90675g00022 1 583 Receptor kinase-like Gene Family AT2G28250 50.329 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Stsc90675g00022 Pkinase 4.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90675g00022 - - gmx:100499641 857.44