Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90675g00019 ATGGGGAATCATGGCGGAGAGAACGGTAGTAATGGGGAGGTAAAGAAGGAGGGGAAGGAGGTGGACGCCTTGGGATGGAAGGAGGCGGCGGAGGGATTGAAGGGAAGCCATTTTGAGGAGGTGAGGGGTATGGTGGGGGACTACAGGAAGGCCGTGGTGAGAGTGGGAGGGGAGAGGCTGAGGATTGCTGAGGTGGCAGCGGTGGCGGGGGGGAGAGGGAGGGTGACGGTGGAGTTGGAGGAGGAGGCGAGGAAGGGAGTGGATGCAAGTAGTGAGTGGGTGATGGATAGCATGCGGAGAGGGATTGACTGTTACGGTGTGACCACAGGGTTTGGTGCAACCTCACACCGGAGAACTACACAAGCTGTAGCCCTTCAAACTGAGCTCATTAGGTTTCTGAATGCTGGAATATTTGGTAATGACAAAGAATCATGTCATACTCTGCCACAAAGTGCAACAAGGGCTGCAATGTTGGTACGGATCAACACACTCCTTCAAGGCTACTCAGGCATCAGATATGAGATCCTAGAAGCCATTGCAAAGCTAATCAACCATGGCATCACACCAGTGGTTCCATTGAGAGGCTCAATTTCTGCCTCTGGAGACTTGGTTCCCTTCTCATACATAGCAGGACTACTCACAGGGAGGCCTAATTCAAAGGCCCTTGCTCCAGATGGTGACACCCTCACCGCGGCGCAAGCCTTCGATCTAGCCGGCATTGGTACCGAATTCTTCGAGTTGCAGCCTAAGGAGGGTCTTGCACTAGTCAATGGAACTGGTGTTGGTGCTGGTTTGGCTTCAATAGTCTTATTTGAGGCCAACATCTTAACCATCTTATCTGAAATCATGTCTGCAATTTTCGCCGAAGTGATGCAGGGTAGGCCAGAGTTTACAGATCATTTGACTCACAAGTTGAAGCATCACCCTGGTCAGATTGAAGCAGCAGCACTAATGGAACATATCTTGAATGGAAGTGCTTATGTTAAATCAGCACAGAAGTTGCATGACATTGAGCCTTTTCAGAAGCCAAAGCAAGATAGATATGCTCTTAGGACTTCCCCTCAGTGGTTAGGACCACAAATTGAAGTGATTCGTTTGTCAACCAAGTCCATTGAAAGAGAGATCAACTCTGTCAATGACAATCCCTTGATCGATGTTTCGAGGAACAAGGCTTTGCACGGTGGCAATTTTCAAGGTACACCGGTTGGTGTTTCAATGGACAATACAAGGCTAGCATTGGCTGCAATTGGAAAACTCATCTTTGCTCAAATGTCTGAGTTGGTCAATGAGTTCTACAACAATGGTTTACCTTCAAACCTCTCTGGGGGACAATGTCCTAGCTTGGATTATGGATTCAAGGGTGCCGAGATAGCGATGGCTGCATATTGTTCTGAGCTTCAGTATCTTGCAAACCCCGTGACAAATCATGTGCAAAGCGCGGAACAACACAACCAGGATGTGAATTCATTGGGGCTGATCTCAACTAGGAAAACAGCTGAAGCTGTTGAGATATTAAAGCTCATGTTTTCAACCTACTTGGTTGCTCTTTGTCAGGCTATAGATTTGAGGCATTTGGAGGATAACATGAAGATCACAGTTAAGAACACAGTGAGCCGAGTAGCTAAGAAAGTCCTCAGTCTAAGTGTCAATGGGGATCTTCATCCTCATCCTTCCAAATCTTGTGAGAAAGATTTGCTCAAAGTGGTTGATTGTGAGCATGTCTTCACCTACATTGATGACCCCTGTAATCTTGCATACCCTTTGATGCAGAAACTGAGGCTAGTGCTTGTGGAACATGCATTGATGAGGAGTAGCAATGGCTTGAAAAGCGTGAACACTACCATCTTCGCAAAGATCAGCGCTTTCGAGGAGGAGCTCAAGAGGGTGCTGCCCAAAGAAGTTGAGGCTACAAGGGATGCTTTTGAGGAAGGGAATGCAGAAAGTCCTAACAAAATCAAGGAATGCAGATCCTATCCAATGTACAAGTTTGTGAGGGAGGAAGTGGGAACAGAGTTTCTAACGGGAGAGAAGAACAAATCCCCTGGTGAAGATTTTGATAAAGTTTTCAATGCAATTAATCAGGGTAAGATAATAGACCCAATCTTTGAATGCCTCAAGGACTGGGATTGCACTCCTCTTCCCATATGTTGGAGCTCCTGA 2160 0.4708 MGNHGGENGSNGEVKKEGKEVDALGWKEAAEGLKGSHFEEVRGMVGDYRKAVVRVGGERLRIAEVAAVAGGRGRVTVELEEEARKGVDASSEWVMDSMRRGIDCYGVTTGFGATSHRRTTQAVALQTELIRFLNAGIFGNDKESCHTLPQSATRAAMLVRINTLLQGYSGIRYEILEAIAKLINHGITPVVPLRGSISASGDLVPFSYIAGLLTGRPNSKALAPDGDTLTAAQAFDLAGIGTEFFELQPKEGLALVNGTGVGAGLASIVLFEANILTILSEIMSAIFAEVMQGRPEFTDHLTHKLKHHPGQIEAAALMEHILNGSAYVKSAQKLHDIEPFQKPKQDRYALRTSPQWLGPQIEVIRLSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPVGVSMDNTRLALAAIGKLIFAQMSELVNEFYNNGLPSNLSGGQCPSLDYGFKGAEIAMAAYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISTRKTAEAVEILKLMFSTYLVALCQAIDLRHLEDNMKITVKNTVSRVAKKVLSLSVNGDLHPHPSKSCEKDLLKVVDCEHVFTYIDDPCNLAYPLMQKLRLVLVEHALMRSSNGLKSVNTTIFAKISAFEEELKRVLPKEVEATRDAFEEGNAESPNKIKECRSYPMYKFVREEVGTEFLTGEKNKSPGEDFDKVFNAINQGKIIDPIFECLKDWDCTPLPICWSS 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90675g00019 719 FunFam Phenylalanine ammonia-lyase 260 579 - -
Stsc90675g00019 719 Gene3D - 14 259 IPR024083 -
Stsc90675g00019 719 CDD PAL-HAL 60 523 IPR001106 -
Stsc90675g00019 719 FunFam Phenylalanine ammonia-lyase 13 259 - -
Stsc90675g00019 719 PANTHER HISTIDINE AMMONIA-LYASE 21 716 IPR001106 -
Stsc90675g00019 719 Pfam Aromatic amino acid lyase 60 527 IPR001106 -
Stsc90675g00019 719 NCBIfam phenylalanine ammonia-lyase 23 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
Stsc90675g00019 719 SUPERFAMILY L-aspartase-like 22 716 IPR008948 GO:0003824
Stsc90675g00019 719 Gene3D - 526 650 IPR023144 -
Stsc90675g00019 719 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90675g00019 Stsc-Chr90675 138894 141798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90675g00019 22 716 Monolignol Biosynthesis Gene Families AT3G53260 73.745 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90675g00019 K10775 - vvi:100241575 1081.63