Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90675g00016 ATGAGTGGCTTAAGGCCTGATCATCAGTCTCATGTAGCACAGCAAATTAGGCGTGATAAATTGAGAATCCAGAACATTTCTCACCATCCACAATCACAGGATTTCCCCAACAATTTGGAACAGCTTTCCATACACCAAGGATTCAACTTGGATCTTCTTCAAGTAAGGAATGTTAGAAATGCACACAACATGCTTCATGATGAGCCTCACCCACAACCACCACCACAACAATCTGTTTATTCATCACAAGTGCCCAATTTCTCATCAACGCCTTTGAACCCTTTGGAGTATCAAGAACTAGCTAGTGCTGCAGCAGCTGAACCTAGTAGTAGTAGTTTCAGTAGGGTAATGATGCATCATCATCACAACTATTGTAATTCATTTCATTCTTCGCAGAAAGATCAAAGTGAACTGCGCAGTTTGGGGAATTGGAGAAGCAGTGCTAACAGTAGTAGTAATCAAGGGTGTGATTGGTTTGTAAATTATGCAGGAAGCAGTTCAATGGCTAATAATGAAAGCAATAATCCCAACACTACTACTCATGTGGCTACTGAGATGAATAATAATGTGTCTTATAACCAGCACTATGAGAAGCCTACTACTTGTTACAATGAATTCACAGATGTAATGGCTAATAGAGAAATTCAGAAGCAATTGGGAGGAGTACTGCATCATCCTTCTTCTTCGTCGTCGTCGCCATTTTATCAGAATACTTTGCAGGATATTGTCAAGTCAGCTTCTATAAGTGCTCAAGTATCAGACAACATGGCCTCACTAATGCAGCAAACTGGACATGGCATTTGGGTTGGAGATGGTAGTGGACTTGACCTTCATCCAAGCTATGGAAACCAACCAAATCAATTGCGTTGTGGCGGTGCTAATCCATGGGCGAATCGGACCGTTGACAATGCCATTCGATGGAATAATAGTCCACTTGGTTTCACAGACAAGAAGGTTGATGAACACTCTGGAAGACCTCTAATGAACAATTCGAATCCTCAGAGCTTGTCTTTATCACTGTCATCAAATTCACAATCAAAGACTTCTGTATCTCAATTTGAGGAAGTGTCAGCATCAGATGATCTTCAATGTAAGGATCCTCAGTACATGAAGTATGTAAGAGCTTTCACAAAGCCATCTATAGTATCAAGAGATTCTGGGAAATCACCTCAAGATCCAATGGGGGTGCCTTCAAGCACTAGCTATAGGAATGTAGGTCCCCTTGGCCCTTTCACTGGTTATGCTACTATTCTCAAGAGCTCAAGGTTCTTGAAATCAGCACAACAGTTATTGGATGAGTTCTGCCGTATATCTAGTCCAAAATTTTCAAAACCACGTGATGTCACACAAAGGCTATCTGGAGAAGCTAGTGCTTCTACTTCTGCTGATGTTGTCACTGTTGATAATCAAACTGAGGCTGCAGCCAAAGAAGGTAGTAATTCAGGCTCTTCATCTTCTATGTTCCATGGTGCAAATGAGAATAATGCAGATTGGAGAACCGGGAGTGGTTCTAGTCTATCTCCTAGGCCGGATTATCAACAGAAGAAGGCAAGGCTCCTTTACATGCAAGAGGAGGTTACCAGGAGATACAGGCAGTACCATCAACAAATGCAGATGGTTGTTTCATCCTTTGAGTCGGTAGCTGGTCTTAGTTCCGCCACTCCTTATATCTCCTTGGCTCTTAAGTCGGTATCGAGACACTTCAAGTGCCTGAAAAATTCAATCTCAGATCAGCTCAAACATATAAGTGAAGTGTTGGGTGAGGATTTCTCAGCACAAAGAACCAGTAGTTGTGCTAAAGATGACACCAGTAACATGGTAAGACTAAGTTGCATGGACCAAAGCTTCCAAAAGAACAAATCTGGCAGGGCTGGCACTGGCCTTTTTGAACCCCAGCAGCATGTTTGGAGGCCCCAAAGAGGCTTGCCCGAACGTTCTGTGGCAATTCTCAAAGCATGGCTATTCGAGCATTTTCTTCACCCTTACCCCACAGACACGGATAAACACATGTTGGCATCACAAACAGGTCTTTCGCGAAACCAGGTGTCGAATTGGTTCATAAATGCTCGAGTGCGAGTATGGAAGCCGATGGTTGAGGAAATACACATGCTTGAAACAAAAGGCACAACAGGTGCCAACAAGAACAACAATCACCCTGCTACTGAAAATGAGAGAGCTTCTGTTAATGAAGATGGTTCCAGCAGCCAACAGCATAGAGTAATAGAAGGGAATCTGAGCAAATTCGACATGCATTCTTTGATTACTGAGAACCAACAGTCGCAGCATCAGTGTATGGAACTTGAAATGGACTCAACCAATGAAGAACAATGGAGCCAAGAGAAGAGGTCTAAATTGGAATGTGAGATGAGTTCAACGAGCATGGCTGAAGGGTCACTCATGATGGGTTTCATGCCATATAGCAGGCGTGATCATCAGGTTGGTGGGCTTGGTTCAGTGTCACTAACATTGGGTCTGAGGCATGGTGTTGAAGCTGTTGTACAAAACCAACAGCAGCAGCAACAGTTACAAGAGGAGCAGCTTAGGCGTCACTTTGGAGGGCACATGATCCATGATTTTGTGGGCTGA 2586 0.4327 MSGLRPDHQSHVAQQIRRDKLRIQNISHHPQSQDFPNNLEQLSIHQGFNLDLLQVRNVRNAHNMLHDEPHPQPPPQQSVYSSQVPNFSSTPLNPLEYQELASAAAAEPSSSSFSRVMMHHHHNYCNSFHSSQKDQSELRSLGNWRSSANSSSNQGCDWFVNYAGSSSMANNESNNPNTTTHVATEMNNNVSYNQHYEKPTTCYNEFTDVMANREIQKQLGGVLHHPSSSSSSPFYQNTLQDIVKSASISAQVSDNMASLMQQTGHGIWVGDGSGLDLHPSYGNQPNQLRCGGANPWANRTVDNAIRWNNSPLGFTDKKVDEHSGRPLMNNSNPQSLSLSLSSNSQSKTSVSQFEEVSASDDLQCKDPQYMKYVRAFTKPSIVSRDSGKSPQDPMGVPSSTSYRNVGPLGPFTGYATILKSSRFLKSAQQLLDEFCRISSPKFSKPRDVTQRLSGEASASTSADVVTVDNQTEAAAKEGSNSGSSSSMFHGANENNADWRTGSGSSLSPRPDYQQKKARLLYMQEEVTRRYRQYHQQMQMVVSSFESVAGLSSATPYISLALKSVSRHFKCLKNSISDQLKHISEVLGEDFSAQRTSSCAKDDTSNMVRLSCMDQSFQKNKSGRAGTGLFEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGTTGANKNNNHPATENERASVNEDGSSSQQHRVIEGNLSKFDMHSLITENQQSQHQCMELEMDSTNEEQWSQEKRSKLECEMSSTSMAEGSLMMGFMPYSRRDHQVGGLGSVSLTLGLRHGVEAVVQNQQQQQQLQEEQLRRHFGGHMIHDFVG 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90675g00016 861 MobiDBLite consensus disorder prediction 316 343 - -
Stsc90675g00016 861 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 298 724 - -
Stsc90675g00016 861 Pfam Homeobox KN domain 653 692 IPR008422 GO:0003677|GO:0006355
Stsc90675g00016 861 Pfam Associated with HOX 417 576 IPR006563 -
Stsc90675g00016 861 MobiDBLite consensus disorder prediction 708 736 - -
Stsc90675g00016 861 CDD homeodomain 636 697 IPR001356 GO:0003677
Stsc90675g00016 861 FunFam BEL1-like homeodomain protein 9 639 701 - -
Stsc90675g00016 861 MobiDBLite consensus disorder prediction 64 92 - -
Stsc90675g00016 861 MobiDBLite consensus disorder prediction 445 512 - -
Stsc90675g00016 861 SUPERFAMILY Homeodomain-like 638 703 IPR009057 -
Stsc90675g00016 861 MobiDBLite consensus disorder prediction 445 511 - -
Stsc90675g00016 861 MobiDBLite consensus disorder prediction 707 736 - -
Stsc90675g00016 861 ProSiteProfiles 'Homeobox' domain profile. 633 696 IPR001356 GO:0003677
Stsc90675g00016 861 SMART prehox3 412 577 IPR006563 -
Stsc90675g00016 861 MobiDBLite consensus disorder prediction 382 401 - -
Stsc90675g00016 861 MobiDBLite consensus disorder prediction 325 343 - -
Stsc90675g00016 861 Gene3D - 639 701 - -
Stsc90675g00016 861 SMART HOX_1 636 700 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90675g00016 Stsc-Chr90675 111460 116575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90675g00016 418 827 Homeobox Transcription Factor Family AT4G34610 37.981 8.91e-65 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc90675g00016 POX 4.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90675g00016 - - adu:107461750 1413.28