Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90675g00005 ATGTCAAACCAGCCTGAATCATCTGACCCGAAATCCGGGAAGAAGGACTACTCGACGGCGATTCTGGAGCGGAAGAAGTCTCCGAACCGTCTCGTGGTGGATGAAGCAGTCAACGACGACAACTCCGTCGTGGCCATGCACCCTGATACCATGGAGAAGCTCCAGCTCTTCCGTGGCGACACTATCCTCATCAAGGGAAAGAAAAGGAGGGATACTGTTTGCATAGCTCTTGCTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTCGAATCTGCGTGTTCGTCTTGGAGATGTTGTGTCTGTGCACCAGTGCCCTGATGTGAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTACTTCTTGGAAGCTTATCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGTGGAGGGATGAGGAGTGTGGAGTTTAAGGTCATTGAAACTGATCCCGGGGAGTATTGTGTGGTTGCTCCAGATACTGAAATCTTCTGTGAGGGGGAGCCTTTGAAAAGAGAGGATGAAGAGAGGCTGGATGACGTTGGATATGACGACGTGGGTGGAGTCAGGAAACAAATGGCACAAATTCGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCAATTGGTGTGAAGCCACCCAAAGGTATTCTACTTTATGGACCCCCTGGTTCTGGGAAGACACTGATAGCAAGAGCTGTTGCTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATGGACCGGAGATTATGTCCAAACTGGCAGGAGAGAGTGAAAGCAATCTTAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCGTCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAAACACATGGTGAAGTTGAAAGGAGGATTGTTTCCCAGCTTTTGACTCTTATGGACGGATTAAAATCCCGTGCTCATGTCATTGTTATTGGAGCTACCAATCGCCCAAACAGCATTGACCCTGCCTTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGAGTTCCTGATGAAGTTGGACGACTTGAAGTTCTTCGTATACACACTAAAAACATGAAGCTCTCTGATGATGTTGATTTAGAGAGGATTTCCAAAGATACTCACGGTTATGTTGTTGAAGTGCCTAATGTTAGTTGGGAGGACATTGGAGGGCTTGAGAATGTTAAGCGTGAGCTGCAAGAGACTGTTCAGTATCCTGTGGAGCACCCAGAAAAGTTTGAGAAGTTTGGCATGTCACCGTCAAAAGGAGTCCTCTTCTATGGTCCTCCAGGATGTGGAAAAACTTTGTTAGCCAAAGCGATTGCTAATGAATGCCAAGCTAACTTCATCAGTGTAAAAGGTCCAGAATTACTTACAATGTGGTTTGGTGAAAGTGAGGCCAATGTTCGAGAAATTTTTGACAAGGCTAGACAATCGGCTCCTTGTGTCCTCTTCTTTGATGAGCTTGACTCCATTGCCACTCAGAGAGGAAGCAGTGTTGGGGATGCCGGTGGTGCTGCTGACAGAGTTTTGAATCAACTTCTGACTGAAATGGATGGCATGTCGGCCAAAAAGACTGTGTTCATAATTGGGGCAACTAACAGACCGGACATCATTGACCCAGCACTTCTTCGTCCGGGCCGTCTGGATCAATTGATCTATATTCCTCTTCCCGATGAGGATTCTCGTCACCAAATCTTCAAGGCCTGCTTGAGGAAGTCACCTGTCTCCAAAGATGTTGATTTGAGAGCACTGGCTAGATATACTCAAGGATTCAGTGGTGCTGATATTACCGAGATATGCCAGCGAGCATGTAAATATGCTATTAGAGAAAACATTGAAAAGGACATAGAACGAGAGAGGAGGAGAAGAGAGAACCCTGAGGCCATGGACGAAGATGTTGTTGAAGATGAAGTTGCAGAGATCAAGGCTGCTCATTTCGAAGAGTCAATGAAGTTTGCACGCAGGAGTGTCAGCGATGCTGATATTCGCAAATACCAGGCATTTGCTCAGACCTTACAGCAGTCGAGGGGATTCGGAAGTGAGTTTCGGTTTCCAGAAACTGCTGAGAGGACTACTGGATCTGACCCCTTTGCAACTGCTTCTGGCGCAGCCGATGAAGACGATCTGTATAGTTAG 2238 0.4598 MSNQPESSDPKSGKKDYSTAILERKKSPNRLVVDEAVNDDNSVVAMHPDTMEKLQLFRGDTILIKGKKRRDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPLKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERISKDTHGYVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALARYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRENPEAMDEDVVEDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPETAERTTGSDPFATASGAADEDDLYS 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90675g00005 745 MobiDBLite consensus disorder prediction 712 745 - -
Stsc90675g00005 745 MobiDBLite consensus disorder prediction 9 23 - -
Stsc90675g00005 745 CDD RecA-like_CDC48_r2-like 428 588 - -
Stsc90675g00005 745 Gene3D - 376 408 - -
Stsc90675g00005 745 SMART CDC48_N_2 30 113 IPR003338 -
Stsc90675g00005 745 PANTHER AAA-FAMILY ATPASE 411 709 - -
Stsc90675g00005 745 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Stsc90675g00005 745 FunFam Transitional endoplasmic reticulum ATPase 7 112 - -
Stsc90675g00005 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 704 IPR027417 -
Stsc90675g00005 745 Gene3D - 204 375 IPR027417 -
Stsc90675g00005 745 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Stsc90675g00005 745 Pfam ATPase family associated with various cellular activities (AAA) 457 590 IPR003959 GO:0005524|GO:0016887
Stsc90675g00005 745 MobiDBLite consensus disorder prediction 1 23 - -
Stsc90675g00005 745 ProSitePatterns AAA-protein family signature. 560 578 IPR003960 GO:0005524|GO:0016887
Stsc90675g00005 745 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Stsc90675g00005 745 Pfam Cell division protein 48 (CDC48), domain 2 132 193 IPR004201 -
Stsc90675g00005 745 Gene3D - 594 703 - -
Stsc90675g00005 745 CDD RecA-like_CDC48_r1-like 209 374 - -
Stsc90675g00005 745 Gene3D - 113 197 - -
Stsc90675g00005 745 FunFam Transitional endoplasmic reticulum ATPase 407 590 - -
Stsc90675g00005 745 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Stsc90675g00005 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 410 IPR027417 -
Stsc90675g00005 745 SMART CDC48_2_2 130 196 IPR004201 -
Stsc90675g00005 745 Gene3D - 409 590 IPR027417 -
Stsc90675g00005 745 Gene3D - 8 112 - -
Stsc90675g00005 745 SMART AAA_5 241 377 IPR003593 GO:0016887
Stsc90675g00005 745 SMART AAA_5 453 592 IPR003593 GO:0016887
Stsc90675g00005 745 SUPERFAMILY ADC-like 26 110 IPR009010 -
Stsc90675g00005 745 FunFam Transitional endoplasmic reticulum ATPase 206 374 - -
Stsc90675g00005 745 Pfam AAA+ lid domain 612 652 IPR041569 -
Stsc90675g00005 745 FunFam Cell division control 48 113 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90675g00005 Stsc-Chr90675 34465 38850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90675g00005 411 649 Calmodulin-binding Proteins AT3G56690 49.791 3.74e-75 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90675g00005 K13525 - gmx:100783508 1313.13