Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90675g00003 ATGGCCAAGTTAAGTGTGAGAAGCAGCATAAAGAAGAGTAGTAGTACTAATAATGGACTTGTGAAGTTGAGGTTTGCGTTGGAGAAGCTAATTCATAAGAGTTTGTTAATGGGGAGTAACAAGAAGTCATCATCAAGTTGTGTGCCTGAGGATGTGAAAGAAGGGCATTTTGCTGTGATTGCTGAGGGATGTGGAGGTGATGATGAGGAAGGGCCAAAGAGGTTTGTGATGCCACTGAGCTGTTTGAGGAACCCAGCATTCTTGAGGCTATTGGAGCAGGCTGAAGAAGAGTATGGCTTTGACCATGAAGGTGCACTTACCATTCCATGCACCCCTTCTCAGCTTCAAAGGATACTACTACTAGAACAACAACAACAAACTATCAACAAGAACCACCATCACCTCTTCAACTTCTCAACTAACCACCTCCAATTCATCATCTCATAA 447 0.4318 MAKLSVRSSIKKSSSTNNGLVKLRFALEKLIHKSLLMGSNKKSSSSCVPEDVKEGHFAVIAEGCGGDDEEGPKRFVMPLSCLRNPAFLRLLEQAEEEYGFDHEGALTIPCTPSQLQRILLLEQQQQTINKNHHHLFNFSTNHLQFIIS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90675g00003 148 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 41 119 IPR003676 GO:0009733
Stsc90675g00003 148 Pfam Auxin responsive protein 40 119 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90675g00003 Stsc-Chr90675 17082 17528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90675g00003 49 119 Calmodulin-binding Proteins AT3G43120 45.205 4.76e-13 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90675g00003 K14488 - aip:107612303 219.164