Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90675g00001 ATGGTGTCCGACGCCAGCAAGAAAAAGGCCGCTCAGAAGAAGGCGGCCGCAGCCGCCAAGAGAGGAGGCAAGGCAGCTGCTTCGAAGGCGTCGGCGTCAGCTTCAGCCTCGGATAAGGCAGCCGACCAGCTCGCCAACGGAGTCGGAGATATTGTCATATCGGATCGGACCTGCACCGGTGTCCTCTGCTCGCATCCCCTATCCAGGGATATTAGGATAGAGTCTCTGTCAGTTACTTTCCATGGACATGATCTGATAGTTGATTCTGAATTGGAGCTGAATTATGGAAGACGCTATGGTTTGCTTGGATTAAATGGTTGTGGAAAATCTACCTTGCTCACGGCAATAGGTATGCGTGAGCTTCCTATTCCAGATCACATGGATATATATCACCTTAGTAGGGAAATTGAAGCCTCTGATATGTCTGCACTGGAGGCTGTAATAAGCTGTGATGAGGAGAGGTTGAGATTGGAGAAAGAAGCTGAAGCTTTAGCCTCACAGGATGATGGTGGTGGTGAAGCACTTGACCGTATATATGAACGTTTGGAAGCCCTTGATGCATCGACTGCAGAAAAACGTGCTGCTGAAATTCTTTTTGGTCTTGGTTTCAACAAGCAAATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTCTAGCCAGAGCTTTATTTATGAACCCCACCGTTCTCTTGCTTGATGAACCAACCAATCACCTCGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAATCTTAAGAAGTTTGAGCGTATTCTGGTTGTGGTTTCACACTCCCAGGATTTTCTTAATGGTGTCTGCACAAATATCATACACATGCAAAGCAAAAAGCTGAAGCTCTACACTGGTAACTACGATCAATATGTTCAGACACGTGCTGAACTCGAAGAGAATCAGATGAAGCAGTACAAATGGGAGCAGGACCAGATTGCCTCGATGAAGGAATACATCGCCCGGTTTGGCCATGGATCGGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGTGGTGGTCTTACAGAGAAGGTGAGTAGGGNNNNNNNNNNTGAAGAGAATCAGATGAAGCAGTACAAATGGGAGCAGGACCAGATTGCCTCGATGAAGGAATACATTGCCCGGTTTGGCCATGGATCGGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGTGGTGGTCTTACAGAGAAGGTGAGTAGGGNNNNNNNNNNACATTTGGTTACACTCCTGAGAATCTCATATACAAGAACATTGACTTTGGGGTTGATTTAG 1344 0.4628 MVSDASKKKAAQKKAAAAAKRGGKAAASKASASASASDKAADQLANGVGDIVISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGMRELPIPDHMDIYHLSREIEASDMSALEAVISCDEERLRLEKEAEALASQDDGGGEALDRIYERLEALDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTVLLLDEPTNHLDLEACVWLEENLKKFERILVVVSHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRAELEENQMKQYKWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVSRXXXXEENQMKQYKWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVSRXXXXHLVTLLRISYTRTLTLGLI 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90675g00001 447 FunFam Abc transporter f family member 1 71 335 - -
Stsc90675g00001 447 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 71 311 IPR003439 GO:0005524
Stsc90675g00001 447 Pfam ABC transporter 366 415 IPR032781 -
Stsc90675g00001 447 Pfam ABC transporter 282 354 IPR032781 -
Stsc90675g00001 447 CDD ABCF_EF-3 71 288 - -
Stsc90675g00001 447 Coils Coil 289 309 - -
Stsc90675g00001 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 315 IPR027417 -
Stsc90675g00001 447 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 14 361 - -
Stsc90675g00001 447 SMART AAA_5 95 297 IPR003593 GO:0016887
Stsc90675g00001 447 Pfam ABC transporter 89 243 IPR003439 GO:0005524
Stsc90675g00001 447 ProSitePatterns ABC transporters family signature. 215 229 IPR017871 GO:0005524|GO:0016887
Stsc90675g00001 447 Gene3D - 71 335 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90675g00001 Stsc-Chr90675 10330 14413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90675g00001 202 269 Calmodulin-binding Proteins AT2G36910 40.000 2.35e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90675g00001 K06185 - gmx:100785099 605.134