Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90674g00023 ATGGCAACTGCAAGGACCGTCAAGGATGTTTCCCCCCATGAATTCGTCAAGGCTTATGCCGCCCATCTCAAGCGTTCTGGAAAGATGGAGTTGCCTGAGTGGACAGACATTGTGAAAACTGCAAAGTTTAAGGAATTGGCTCCTTATGATCCTGACTGGTATTATATTAGAGCTGCCTCCATGGCAAGGAAGGTTTATTTGAGGGGTGGCCTTGGTGTTGGTGCTTTTAGGAGGATCTATGGTGGAAGCAAGAGAAATGGAAGCCGTCCCCCGCATTTCTGCAAGAGTAGCGGCGGTATTGCTAGACACATTCTGCAACAGTTGCAAACCATGAACATTATTGAGCACGATTCAAAGGGGGGAAGAAAAATCACTTCTAGCGGACGAAGGGATCTTGATCAAGTTGCTGGCCGCATTGTGATAGCTCCTTGA 432 0.4769 MATARTVKDVSPHEFVKAYAAHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLQTMNIIEHDSKGGRKITSSGRRDLDQVAGRIVIAP 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90674g00023 143 Gene3D - 1 142 IPR036388 -
Stsc90674g00023 143 FunFam 40S ribosomal protein S19 2 142 - -
Stsc90674g00023 143 PANTHER 40S RIBOSOMAL PROTEIN S19 2 138 IPR001266 GO:0003735|GO:0005840|GO:0006412
Stsc90674g00023 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Stsc90674g00023 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Stsc90674g00023 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Stsc90674g00023 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 140 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90674g00023 Stsc-Chr90674 130424 132062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90674g00023 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 90.141 1.35e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90674g00023 K02966 - gmx:100499800 277.33