Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90674g00003 ATGGTTTCGAGAGGGTTGTTCGGCTGGTCCCCGCCGCACGTGCAACCGCTGACGCCGGTTTCGGAGGTCTCGGAGCCGCCGGAGTCTCCGTCGCCGTACCTTGACCCTGGCGCCGAGACCTCCGCGTCGCAGCAGCAAGTGGAGGTCGATGAGGAGATGGAGGAGCCGGAGGAGGTCGAGCCTCCGCCGGCGGCGGTTCCGTTCTCCAGGCTCTTCGCGTGCGCTGACCGGTTTGACTGGTTCCTCATGGCTGCTGGTTCGGTCGCCGCCGCAGCTCACGGCGCCGCCCTCGTTGTTTACCTGCACTATTTTGCGAAGATCATACACCTGCTGCGGATGGATCCTAACCAAGAGCACGAGCTGTTTCACAGGTTCAAAGAGGCATCCTGCCTCCCTCCCATACCTCTTAACCCTCCATGGCTTGCTTTAACCATTGTTTATATTGCTGCGGGAGTTTTTGCAGCTGGTTGGATTGAGGTTTCTTGCTGGATTTTGACTGGAGAACGCCAAACTGCGGTCATAAGGTCAAAATATGTTCAAGTGTTACTAAATCAAGATATGAGCTTTTTTGATACTTATGGAAATAATGGAGACATTGTAAGTCAAGTATTGAGTGATGTGCTGCTTATTCAGTCTGCCCTTAGTGAAAAAGCAGTTTCCTATGCAAGGACATTGTATGCATTCACAAATGAAACATTGGCCAAGTATTCCTATGCAACATCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACATATGGGCTTGCAATATGTTCCTGTGCATTGCAACTCTGGGTTGGAAGGTTCTTGGTTATACATGGAAAAGCACATGGTGGTGAAATTATAACAGCTCTGTTTGCTGTAATTCTAAGTGGCTTGGGATTGAATCAAGCAGCAACCAACTTCTACTCATTTGATCAGGGGAGAATTGCTGCTTATAGATTATTTGAGATGATTAGCCGGTCATCCTCATCTGATGATCATGATGGCATCACTCCTGATTCTGTGCAAGGAAACATAGAGTTTCGGAATGTTTATTTCAGCTATCTTTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTTAGTGTACCTGCTAAGAAAGCTGTGGCCCTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTCTATGATCCTACATTAGGGGAAGTTCTTCTTGATGGAGAAAACATCAAGAACTTGAAACTTGAATGGCTAAGGAGCCAAATAGGACTAGTCACCCAGGAGCCTGCTTTGCTTAGTTTGAGTATAAGAGATAATATTGCTTATGGGAGGGATGCCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACATTTATCAGCTCATTGGAGAAAGGTTATTACACACAGGTTGGCAGGGCTGGTCTGGCTTTGACTGAAGAGCAAAAAATAAAACTTTCTATTGCTAGAGCTGTGCTTTTAAATCCATCAATTCTTCTACTTGATGAGGTTACTGGTGGTCTTGATTTTGAGGCTGAGAGAGCTGTTCAGGGGGCTCTGGACCTACTGATGCTGGGACGCTCAACAATAATAATTGCTCGACGGCTTAGTCTCATAAGGAATGCTGATTATATCGCTGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCATGATGAATTATTGTCCTTGGATGGCTTATATGCAGAGCTTCTTCGATGTGAAGAAGCAGCAAAACTTCCAAAGAGGATGCCTGTTCGAAATTACAAGGAGACTGCTGCATTTCAAATTGAGAAGGATTCTTCAGCAAGTCATAGCTTCAAAGAACCATCCTCCCCTAAAATGTTGAAGTCACCTTCTCTTCAAAGAGTATCTAATGTATCCCGCCCTCCAGATGGAAACTTTAACTTGCTTGAATCACCAAAGGTCCGGAGTCCACCACCTGAGAAGATGGTGGAAAATGGTCAGGCTCTGGATGGAGCAGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAGATGAGACTTCCAGAGTTACCCAAGATTGATGTTCAGTCTCTGCATCGTCAAAAATCAAATGGTTCTGACCCAGAATCTCCTGTTTCTCCCCTTTTAACATCTGATCCCAAGAGCGAACGCTCCCATTCACAGACTTTTAGTAGACCACAGAGTTATTCTGATGATCTTTCAGCTGAAAAGAGAAAATTGAAGGATACAAGGCATCAAAAACCACCATCACTTAGGAAGCTGGCCGAGCTTAGCTTCGCTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCTCTTCTTGCTTATGTTATTGGTCTTGTGGTGACAGCTTACTATAATATTGACAAAGAACATCACTTACGATGGGAGGTAAACAAGTGGTGTTTAGCCATTGGCTGCATGGGTATTGTGACAGTAATTGCTAACTTTTTACAGCATTTCTACTTTGGTATCATGGGGGAGAAAATGACAGAAAGGGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTAGGGTGGTTTGATGAAGAGGAAAACAGTGCTGACAATTTGTCCATGCGATTGGCCAATGATGCTACTTTTGTACGAGCCGCTTTTAGCAATCGGCTGTCGATATTTATTCAGGACAGTGCTGCAATTATTGTTGGTCTTCTAATCGGTGCCTTACTGCAGTGGCAATTAGCACTTGTGGCTTTGGCAACCCTTCCAATTCTCTGTGTTGCTGCAATTGCCCAGAAAATGTGGCTTGCTGGATTTTCAAGGGGAATACAGGAGATGCACAGAAAGGCATCTTTGGTTCTTGAAGACGCAGTTAGAAACATTTACACGGTTGTTGCATTTTGTGCTGGTAATAAGGTAATGGAACTCTATAGGCTGCAGTTGAAGAAAATATTTAGGAAGAGCTTTCTTCATGGGATGGCAATCGGTTTTGCATTTGGCTTTTCACAGTTCCTACTTTTTGCTTGTAATGCCCTTCTTCTTTGGTACACTGGAATATGTATAAAAAAAGGCTATATGGAACTATCTACTGCACTCAAGGAGTACATGGTTTTCTCATTTGCAACATTTGCTCTTGTAGAGCCTTTTGGATTGGCTCCTTACATCCTTAAACGACGGAAGTCTCTCATATCAGTGTTTGAGATTATAGATCGCGTGCCTAAAATTGATCCTGATGATAGCTCAGCATTGAAGCCACCCAATGTACATGGAAGAATTGAGTTAAAAAATGTTGATTTCTGTTATCCAACTCGTCCAGAAGTTTTGGTATTGAGCAATTTTAGTCTCAAAGTCAATGGTGGGCAAACGGTTGCTGTTGTGGGAGTTTCTGGGTCAGGAAAGAGCACAATTATATCTTTGATTGAGAGATTTTATGATCCAGTTTCTGGCCAAGTTTTACTTGATGGAAGGGATTTAAAGGTCTACAACTTGAGATGGCTGAGGAGCCACCTTGGTCTGGTTCAGCAGGAACCTATTATCTTCTCAACAACCATAAGGGAAAACATCATATATGCAAGGCACAATGCCAGCGAAGCTGAGATGAAAGAGGCTGCGAGAATAGCAAATGCCCATCACTTTATTAGCAGCTTGCCTCATGGTTATGACACTCATGTTGGGATGCGAGGTGTTGACTTAACTCCTGGACAAAAACAGAGAATTGCAATTGCGAGGGTCGTGTTGAAAAATGCTCCTATTTTGTTGTTGGATGAAGCAAGCTCATCAATTGAATCCGAGTCAAGCCGGGTGGTGCAAGAAGCTCTAGACACGTTAATAATGGGGAACAAGACCACCATTTTAATTGCACATAGGGCTGCAATGATGAGGCATGTGGACAATATCGTAGTGCTTAATGGGGGACGGATAGTGGAGGAGGGGACTCATGATTCATTGATGGCTAAGAATGGTCTGTATGTCCGATTAATGCAACCTCATTTTGGTAAGGCTTTGCGACAGCATCGGCTTGTTTAG 4044 0.4392 MVSRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPGAETSASQQQVEVDEEMEEPEEVEPPPAAVPFSRLFACADRFDWFLMAAGSVAAAAHGAALVVYLHYFAKIIHLLRMDPNQEHELFHRFKEASCLPPIPLNPPWLALTIVYIAAGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKAVSYARTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSDDHDGITPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLSVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATMDQIEEAAKIAHAHTFISSLEKGYYTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQGALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLSLDGLYAELLRCEEAAKLPKRMPVRNYKETAAFQIEKDSSASHSFKEPSSPKMLKSPSLQRVSNVSRPPDGNFNLLESPKVRSPPPEKMVENGQALDGADKEPSIRRQDSFEMRLPELPKIDVQSLHRQKSNGSDPESPVSPLLTSDPKSERSHSQTFSRPQSYSDDLSAEKRKLKDTRHQKPPSLRKLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYNIDKEHHLRWEVNKWCLAIGCMGIVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAIIVGLLIGALLQWQLALVALATLPILCVAAIAQKMWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFRKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGICIKKGYMELSTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALKPPNVHGRIELKNVDFCYPTRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVSGQVLLDGRDLKVYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLMAKNGLYVRLMQPHFGKALRQHRLV 1347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90674g00003 1347 Pfam ABC transporter 372 516 IPR003439 GO:0005524
Stsc90674g00003 1347 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 225 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90674g00003 1347 MobiDBLite consensus disorder prediction 1 64 - -
Stsc90674g00003 1347 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 227 318 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90674g00003 1347 Pfam ABC transporter transmembrane region 87 218 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90674g00003 1347 Pfam ABC transporter transmembrane region 780 1044 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90674g00003 1347 Pfam ABC transporter transmembrane region 221 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90674g00003 1347 CDD ABC_6TM_Pgp_ABCB1_D2_like 770 1081 - -
Stsc90674g00003 1347 Gene3D ABC transporter type 1, transmembrane domain 718 938 IPR036640 GO:0005524|GO:0016020
Stsc90674g00003 1347 Gene3D ABC transporter type 1, transmembrane domain 945 1095 IPR036640 GO:0005524|GO:0016020
Stsc90674g00003 1347 Pfam ABC transporter 1116 1264 IPR003439 GO:0005524
Stsc90674g00003 1347 FunFam ABC transporter B family member 20 341 588 - -
Stsc90674g00003 1347 SUPERFAMILY ABC transporter transmembrane region 69 326 IPR036640 GO:0005524|GO:0016020
Stsc90674g00003 1347 FunFam ABC transporter B family member 6 715 943 - -
Stsc90674g00003 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 585 IPR027417 -
Stsc90674g00003 1347 MobiDBLite consensus disorder prediction 699 739 - -
Stsc90674g00003 1347 MobiDBLite consensus disorder prediction 612 645 - -
Stsc90674g00003 1347 Gene3D ABC transporter type 1, transmembrane domain 63 218 IPR036640 GO:0005524|GO:0016020
Stsc90674g00003 1347 MobiDBLite consensus disorder prediction 690 756 - -
Stsc90674g00003 1347 SUPERFAMILY ABC transporter transmembrane region 757 1083 IPR036640 GO:0005524|GO:0016020
Stsc90674g00003 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1087 1334 IPR027417 -
Stsc90674g00003 1347 Gene3D - 341 588 IPR027417 -
Stsc90674g00003 1347 FunFam ABC transporter B family member 6 945 1095 - -
Stsc90674g00003 1347 Gene3D ABC transporter type 1, transmembrane domain 219 603 IPR036640 GO:0005524|GO:0016020
Stsc90674g00003 1347 FunFam ABC transporter B family member 20 1088 1337 - -
Stsc90674g00003 1347 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1098 1335 IPR003439 GO:0005524
Stsc90674g00003 1347 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 775 1067 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90674g00003 1347 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 351 586 IPR003439 GO:0005524
Stsc90674g00003 1347 Gene3D - 1096 1335 IPR027417 -
Stsc90674g00003 1347 MobiDBLite consensus disorder prediction 740 756 - -
Stsc90674g00003 1347 SMART AAA_5 1125 1312 IPR003593 GO:0016887
Stsc90674g00003 1347 SMART AAA_5 378 557 IPR003593 GO:0016887
Stsc90674g00003 1347 PANTHER ABC TRANSPORTER B FAMILY 738 1334 IPR039421 -
Stsc90674g00003 1347 MobiDBLite consensus disorder prediction 612 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90674g00003 Stsc-Chr90674 17448 25592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90674g00003 53 643 Calmodulin-binding Proteins AT2G36910 38.404 6.59e-124 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90674g00003 K05658 - gmx:100789116 2020.74