Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90674g00002 ATGCACAGATCCAAGACATCAAGAGAAGGATTGATGAGATCTACCAAAACAAGTCCAAATATGGCATCCAACAAGGTGATTTTTCAAAGTCCTACTGAAAAAGACTCATTGCTTGCTAGAAGGAGGGATGTGGAAGAAGAAGAGGTAGTTGGCTTGGTGCATGACTCCAATGAGGTGATTAACCACCTCGACGGAATAGGAGATTCGAGTCGTAGAGTTGTTTGCATATTAGGCATGGGTGGCTTGGGAAAGACTACTCTTGCTCGAAAGATCTACAACAGAGACAAGATCAAGCACATGTTCCGGTGTCGTGTGTGGGGTTTTGTGTCCAATGACTACAGAGCTCAAGAATTCTTATTGAGTCTTTTGAAGCATTTGGGGTTATCCACAGAGGCTACTGATCAAGAGAAAATGAAAAAAAAGATTAGAGAACACCTGAGTGGAACGAAATATTTGCTAGTGTTAGATGACATTTGGAAAACTCAAGTGTGGGACGAGGTGCAAGGAGCCTTTCCTGATGACAACAATGGTAGCAGAATATTGATAACCACGCGTGTGGAGGAGATTTCTCACTATACAAGAGCAGTCTTCACATACAGACTCCCATTTCTTGATCAAAGTCAGAGTTGGGAACTTTTCTGTAAGAAGGTGTTTTGCAAAGAAGAATGTCCTGATGAACTTGAAACTCTTGGCAGAGAAATGGCTAATGGTTGCAAAGGTTTGCCACTTGCCATTGTTGTGTTGGCAGGTATAGTTGCAAAGAGAGAGAGGTCCCGAAGAGAATGGAATAAAATCAAGAATCGTGTTTCCTGGCACTTTGATCAAGAGGAGTATAGAATTGTGAATGATATTCTGAAGCTTAGCTATGATGACCTTCCTCAAGTATTAAAGCCATGCTTTCTTTATTTGGGTGTGTATCCTGAAGATTATGAAATCCATGTTAGAAGATTATGCCTATTGTGGATAGCTGAAGGGTTCATTCAAGCAAACCAAGTTGGAGCATCCAATTCACCAGAATTAGAAGATATTGCTGACATGTACTTAGATAAGCTTGTGGAACGTAGCTTGGTGCAAGTGGCAAGTAGGAGGAGTGATGGAGGTGTAAAGACATGTAGAATCCATGATCTTCTGCGTGACCTCTGCATTTTAGAGAGCAGAGAAAACAAGTTTATGGAAGCGTGCAAGGAGTTGGATAATAACAAGAGCAATCCCCGTAGGATGTCTCTCCAGTATACAACAACTCAATTTTGGTCCACAAAAAATGACCAATCACATACACGTACACGCTCTTTGCTCCTTTTTGGTGAATGGATTAAAGACCAAGCAAAAGGGTGGAATCAGGTAACGAATAACTTCAAGTTGGCTCGTGTATTGGACATGAATCAAGTGGTGTTATATTCATCACCTAGTAGATTGAAGACATTGATCCATATAAGATACTTGAAAGTGAAGGTATACATTTTTAGAATTGCAAATGATGTTTTGACTTCTATATGCAATCTTTGGAATCTAGAAACACTATATTTATGGGTTTCTAAGAATGAGGGTGAGGGTGATTCTTTGACTCTACCAGCCAAATTATGGAAGCTCAAGTCACTAAGGCATATTTATTTAAAATATGATAAGGTATTTCTATTATCATCATCATTATTTTATAGAGGAGCATCAGTGTCGAAGATGAAATATGGAGAAACAAGGGTGGACAATCTCCTAACTCTAGGTGATATCTATCATGATACACGAGTAGCAAACGTCCTAAACCAGGGTATGTTTCCCAACTTGAAAAAATTAACTTTATGTGGAATGAAGGAGGGAAAGCAAGAAGAAGAAGAATTATTATTAGGGAAAGCTCTCCAATGCCTAAACAAACTTGTTACACTAAAGCTAATCGGCATCAGGGAGATTCCATTAGATCCGAATGTGTTTCCTAAAAGTCTTACCAAGATTACCATCAGAGACTTTGAAAAGGATGCAAGATTTATCAAGACTTTGGGACAACTTCCCAACCTCCAAATCTTGAAACTATCCTACGGACGGATACTTGAAGATGTTAATTGTGCAGCTGGGGACTTCCCACAGCTTCAATTTCTACATGTGGATGTGGGATATAATGCTCCCGTTCACCATAACACTGGCAGGTGGAAAATAGAGCAAGGAGCAATGCCTCACATTCAACATTGCTTTTGCAACATGTCTTTACAAGACATGAACAGACGTGGCATTCGACATTGCTTTGGGTTGGACTCAGACTCGGACTTGTACTCGGACATGACGCAATGA 2280 0.4009 MHRSKTSREGLMRSTKTSPNMASNKVIFQSPTEKDSLLARRRDVEEEEVVGLVHDSNEVINHLDGIGDSSRRVVCILGMGGLGKTTLARKIYNRDKIKHMFRCRVWGFVSNDYRAQEFLLSLLKHLGLSTEATDQEKMKKKIREHLSGTKYLLVLDDIWKTQVWDEVQGAFPDDNNGSRILITTRVEEISHYTRAVFTYRLPFLDQSQSWELFCKKVFCKEECPDELETLGREMANGCKGLPLAIVVLAGIVAKRERSRREWNKIKNRVSWHFDQEEYRIVNDILKLSYDDLPQVLKPCFLYLGVYPEDYEIHVRRLCLLWIAEGFIQANQVGASNSPELEDIADMYLDKLVERSLVQVASRRSDGGVKTCRIHDLLRDLCILESRENKFMEACKELDNNKSNPRRMSLQYTTTQFWSTKNDQSHTRTRSLLLFGEWIKDQAKGWNQVTNNFKLARVLDMNQVVLYSSPSRLKTLIHIRYLKVKVYIFRIANDVLTSICNLWNLETLYLWVSKNEGEGDSLTLPAKLWKLKSLRHIYLKYDKVFLLSSSLFYRGASVSKMKYGETRVDNLLTLGDIYHDTRVANVLNQGMFPNLKKLTLCGMKEGKQEEEELLLGKALQCLNKLVTLKLIGIREIPLDPNVFPKSLTKITIRDFEKDARFIKTLGQLPNLQILKLSYGRILEDVNCAAGDFPQLQFLHVDVGYNAPVHHNTGRWKIEQGAMPHIQHCFCNMSLQDMNRRGIRHCFGLDSDSDLYSDMTQ 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90674g00002 759 PRINTS Disease resistance protein signature 73 88 - -
Stsc90674g00002 759 PRINTS Disease resistance protein signature 665 681 - -
Stsc90674g00002 759 PRINTS Disease resistance protein signature 238 252 - -
Stsc90674g00002 759 PRINTS Disease resistance protein signature 145 159 - -
Stsc90674g00002 759 Gene3D - 203 293 IPR042197 -
Stsc90674g00002 759 MobiDBLite consensus disorder prediction 11 26 - -
Stsc90674g00002 759 FunFam Probable disease resistance protein At1g63360 289 383 - -
Stsc90674g00002 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 303 IPR027417 -
Stsc90674g00002 759 MobiDBLite consensus disorder prediction 1 26 - -
Stsc90674g00002 759 FunFam Probable disease resistance protein At1g61300 32 196 - -
Stsc90674g00002 759 Gene3D - 34 196 IPR027417 -
Stsc90674g00002 759 Pfam NB-ARC domain 56 291 IPR002182 GO:0043531
Stsc90674g00002 759 Gene3D Ribonuclease Inhibitor 388 726 IPR032675 -
Stsc90674g00002 759 Gene3D - 294 382 IPR036388 -
Stsc90674g00002 759 SUPERFAMILY L domain-like 373 699 - -
Stsc90674g00002 759 PANTHER DISEASE RESISTANCE PROTEIN RP 44 709 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90674g00002 Stsc-Chr90674 12309 15029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90674g00002 72 380 WRKY Transcription Factor Family AT5G45050 22.930 4.03e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90674g00002 - - aip:107637445 899.812