Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90673g00032 ATGGAACCATACCGTTATTCTCCCAAGGGAAGTGGAGCCTTATATTGGGAATCCTGTAGATCTCAATTGGAGGGATCAACATCATTAGATGGTGATATGAGCAATTCAATTTCAGATGATATGGCTTGTCGCTTCTCCGAGCTCATGAATTTTGATCCTTATGCTGGCTTGTGCAATAACCCGTCCATCGACCGGGTTTTCAGTAATGGCCTTCCATCAACATATCCATCTACCCCTGGGTTTAATCTAGAGGAACACAACAGTAGCCAATTCTTCATGACAGAAATGAATGGAAATTTCAACACTAAGCAAGGCTCCCCTGGTTATGGGGAAAAATTTACTTTTCAACAAATGGACACCCTACTTGGTTTCTTTGATAGTACAGATGATATACATAGTTTAAGTTCTAAGCAAAAAACTAATGGCTCTTCTCAACATCTTGATACCTGTGACGCCATTGGCAATTATATCGTGACGAAGCCACCTAGTTTGTCACTTGATGAGAGAATGTTGAAAGCCTTGTCCTTCTTGATGGAATCAGCTGGTGGTGGAATATTAGCACAGGTTTGGGTTCCTATAAAGGATGGTGATCAATTTTTCTTGAGCACAAGTGAACAACCTTATCTACTAGACCAAATTCTTGCCGGATATCGTGAAGTCTCAAGAAAATACACATTTTCTGCTGAAGGAAAATCGGGTTCTTTCCCAGGACTTCCTGGTCGTGTGTTTATGTCCAAAACTCCTGAGTGGACTTCCAACGTTGGTTATTACAATAAGAATGAGTACTTGAGGATGGATCATGCGATTAATCACGAGGTTCGTGGATCAATTGGTTTACCCATATCTGATATGCACTCTGAACTGCCATGCTGTGCTGTACTAGAGCTTGTCACTACAAATGAGAAGCATGATTTTGACAAGGAAATGGATATTGTTTGTCATGCACTACAGAATGTAGATCTAACTGCTAATATGCCTCCTCGGCTTCTTCCTCAGTATCTTTCAAATGGCAAACGTGCTGCTTTAACGGCCATAATTGATGTCTTACGATCCATTTGTCATGCGCATAGATTGCCACTGGCACTAACATGGATTCCTTGTTGTGTCAATGAAGACACAGAAGGTAAAGATACAAGGATACACATTAAAGAGAGTCGTTCGAATCCTCATGAAAAGAACATTCTGTGCGTCGAAGAATCTGCATGCTATATAACTGATAATGCAATGGAAGGATTTGTTCATGCTTGCATTGAACACCATCTTGAGGAAGGGAAAGGTATAGCTGGGAGAGCTCTTAAATCAAATCATCCTTTCTTTTGTCCTGATGTGAAGGCATATAATATTAGTGAATATCCACTTGTTCATCATGCGCGCAAGTACAACTTGAATGCTGCAGTTGCAATTAGGCTGAGGAGTACTTATACTAATGATGATGATTACATACTGGAATTCTTTTTGCCTGTCAACATGAAAGGGAGTTCAGAGCAGCAACTTCTCTTAGACAACCTCTCAGGTACCATGCAGAAAGTTTGTAGGAATTTAAGAACAGTTTCAGATGAGGAATTATCGAGAATGGAAGGCTCGCAGGTAGGAATTGAAAACAAAAATGTCCCAGGAATTTTTCCTATGTCCAGGAGAAACTCCCAGATACCATTAACAAACAGTAATCATGATTCAGTCAGTAAGATGTCCATCAAGGAATCTTACCATGGAAACAGTGGAATTGAGTCTTCTCATAACCAGGAAAGGAATGGATCAAGAAGGATGGTTGAGAAAAAGAGAACAGCTGAGAAGAAAGTTAGTTTGAGTGTTCTTCAGCAACACTTTTCTGGTACTCTAAAGGATGCTGCTAGGAGCATTGGTGTTTGCCCGACCACTCTGAAAAGGATATGCAGGAAAGAAGGAATTTCAAGATGGCCATCCCGCAAGATCAAGAAAGTGAATCGATCTTTAAAGAAAATACAGATCGTGCTTGACAGCGTCGAAGGAGTGGAAGGAGGGTTGAAGTTTGATCCCTGTATGGGGGCTCTTGTATCAAGAGAAGGAGAATCAATCCTCCAAGAAATTGCACATGAGGGTGGTTCGAGAGTAGACAAATCGAAACATTCAAGTTCCTTAGGTTATAGGGATGATGATGGAGTTGCTGAACACAACCAACCTACTTCTTCAGGCTTTACAAACTCATCTGATGGTTCTGGTTCAAACCAGAAGCAGAACTTGAAAGGCAAATCAATCATGGTTGATAAAAGTGGGTTGAAAATTCAAGCCAAAGCTACCTATGGGGAAGACACGGTTCGTTTCAAGTTTGATCCATCTTGGGGTTGTTTAAAGCTATATGAAGAAGTTGCAACAAGGTTCAAATTACAAAATGGATCATTTCAGCTCAGATATGTAGATGATGAACAAGAGTTGGTGAGATTGTTAGATGACTCAGATTTGCAGGAGTGTCTTGAAATATTGGATGATGCTGGGAAACGTAGTGTTAGGTTCGTTGTTCGCGACATGCCATGCAATTTAAGCAGTGCCAGCAGCAGTAGTTGCTACCTAGGATGTAACTCATAG 2562 0.4079 MEPYRYSPKGSGALYWESCRSQLEGSTSLDGDMSNSISDDMACRFSELMNFDPYAGLCNNPSIDRVFSNGLPSTYPSTPGFNLEEHNSSQFFMTEMNGNFNTKQGSPGYGEKFTFQQMDTLLGFFDSTDDIHSLSSKQKTNGSSQHLDTCDAIGNYIVTKPPSLSLDERMLKALSFLMESAGGGILAQVWVPIKDGDQFFLSTSEQPYLLDQILAGYREVSRKYTFSAEGKSGSFPGLPGRVFMSKTPEWTSNVGYYNKNEYLRMDHAINHEVRGSIGLPISDMHSELPCCAVLELVTTNEKHDFDKEMDIVCHALQNVDLTANMPPRLLPQYLSNGKRAALTAIIDVLRSICHAHRLPLALTWIPCCVNEDTEGKDTRIHIKESRSNPHEKNILCVEESACYITDNAMEGFVHACIEHHLEEGKGIAGRALKSNHPFFCPDVKAYNISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMKGSSEQQLLLDNLSGTMQKVCRNLRTVSDEELSRMEGSQVGIENKNVPGIFPMSRRNSQIPLTNSNHDSVSKMSIKESYHGNSGIESSHNQERNGSRRMVEKKRTAEKKVSLSVLQQHFSGTLKDAARSIGVCPTTLKRICRKEGISRWPSRKIKKVNRSLKKIQIVLDSVEGVEGGLKFDPCMGALVSREGESILQEIAHEGGSRVDKSKHSSSLGYRDDDGVAEHNQPTSSGFTNSSDGSGSNQKQNLKGKSIMVDKSGLKIQAKATYGEDTVRFKFDPSWGCLKLYEEVATRFKLQNGSFQLRYVDDEQELVRLLDDSDLQECLEILDDAGKRSVRFVVRDMPCNLSSASSSSCYLGCNS 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90673g00032 853 MobiDBLite consensus disorder prediction 717 742 - -
Stsc90673g00032 853 ProSiteProfiles RWP-RK domain profile. 582 667 IPR003035 -
Stsc90673g00032 853 MobiDBLite consensus disorder prediction 691 742 - -
Stsc90673g00032 853 SMART PB1_new 753 835 IPR000270 GO:0005515
Stsc90673g00032 853 Pfam RWP-RK domain 600 647 IPR003035 -
Stsc90673g00032 853 MobiDBLite consensus disorder prediction 568 589 - -
Stsc90673g00032 853 PANTHER PROTEIN NLP8 105 846 IPR045012 GO:0003700
Stsc90673g00032 853 MobiDBLite consensus disorder prediction 692 716 - -
Stsc90673g00032 853 Gene3D - 752 836 - -
Stsc90673g00032 853 Pfam PB1 domain 755 833 IPR000270 GO:0005515
Stsc90673g00032 853 ProSiteProfiles PB1 domain profile. 753 835 IPR000270 GO:0005515
Stsc90673g00032 853 SUPERFAMILY CAD & PB1 domains 750 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90673g00032 Stsc-Chr90673 145009 149347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90673g00032 756 850 NLP Transcription Factor Family AT2G43500 64.211 6.33e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc90673g00032 PB1 9.9e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90673g00032 - - aip:107613413 1490.32