Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90673g00014 ATGAAGATTCAGTGTGATGTGTGTGAGAAGTCTCAGGCAACTGTGATTTGTTGTGCAGATGAGGCAGCTTTGTGTGCCAAATGTGATGTTGAGATTCATGCTGCTAACAAGCTTGCTAGAAAGCACCAGAGACTCCTCCTTCAATGCCTCTCTAACAAGCTTCCCAGATGTGACATATGCCAAGACAAGCCAGCTTTCATATTCTGTGTTGAAGACAGAGCACTCTTCTGTCAGGATTGCGACGAACCGGTTCACTCGGCCGGAAGCCTCTCGGCGAACCACCAGAGATTCCTTGCTACCGGGATCCAAGTGGCATTGAGTTCTTCATCTAATTGCAACATAGGCAATGAAAAGAGTCACATGGAGCCACCAAATAGGAACAATGCACAACAAGTTCCTATGGAAGTTCCTCCTCAGCAAGTTCCTAACTTCACATCTTCTTGGGCTGTTGATGACTTATTGGAACTATCAGCCTTTGAATCACCTGAAAAAGTTCAGAAGGAATCTATGCAGTTTGGAGAATTGGAATGGATTGAAGATGTTGGTCTTTTTGGTGAACAGTTTCCACATGAAGCCTTGGCTGCTGCTGAAGTTCCTCAGCTTACTAGCAACAACCATGTTGCTTCATTCAGAACCACCAATAAGTCCTACTTGTCTAACAAGAAACCTAGAATTGAAGATGATGATGATGAGTTCTTCACAGTGCCAGATCTTGGTTGA 720 0.4431 MKIQCDVCEKSQATVICCADEAALCAKCDVEIHAANKLARKHQRLLLQCLSNKLPRCDICQDKPAFIFCVEDRALFCQDCDEPVHSAGSLSANHQRFLATGIQVALSSSSNCNIGNEKSHMEPPNRNNAQQVPMEVPPQQVPNFTSSWAVDDLLELSAFESPEKVQKESMQFGELEWIEDVGLFGEQFPHEALAAAEVPQLTSNNHVASFRTTNKSYLSNKKPRIEDDDDEFFTVPDLG 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90673g00014 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Stsc90673g00014 239 CDD Bbox1_BBX-like 5 47 - -
Stsc90673g00014 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Stsc90673g00014 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Stsc90673g00014 239 Gene3D Classic Zinc Finger 1 92 - -
Stsc90673g00014 239 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Stsc90673g00014 239 CDD Bbox1_BBX-like 57 98 - -
Stsc90673g00014 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 238 - -
Stsc90673g00014 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90673g00014 Stsc-Chr90673 55378 56769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90673g00014 1 165 Orphan Transcription Factor Family AT1G06040 63.529 2.53e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Stsc90673g00014 zf-B_box 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90673g00014 - - gmx:100814727 388.267