Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90672g00006 ATGTCAGAGATGAGACAGCAGGAGGAGCCTACTATCTTACACTTTTCTGAAGATGAGGAAGATCTTGTTGCTAGGATGTTTAGATTGGTTGGCAAGAGGTGGTCTCTTATTGCTGGGAGAATCCCTGGAAGAACAGCACAAGAGGTTGAAAAGTATTGGACTTCAAAGTGCGCATTTCCCAGTGACCAATGCTCTTCCTCTGCATAA 207 0.4444 MSEMRQQEEPTILHFSEDEEDLVARMFRLVGKRWSLIAGRIPGRTAQEVEKYWTSKCAFPSDQCSSSA 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90672g00006 68 CDD SANT 15 53 IPR001005 -
Stsc90672g00006 68 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 61 IPR017930 -
Stsc90672g00006 68 FunFam MYB-like transcription factor 14 56 - -
Stsc90672g00006 68 SMART sant 11 59 IPR001005 -
Stsc90672g00006 68 ProSiteProfiles Myb-like domain profile. 15 57 IPR001005 -
Stsc90672g00006 68 SUPERFAMILY Homeodomain-like 15 55 IPR009057 -
Stsc90672g00006 68 Gene3D - 14 57 - -
Stsc90672g00006 68 Pfam Myb-like DNA-binding domain 15 53 IPR001005 -
Stsc90672g00006 68 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 14 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90672g00006 Stsc-Chr90672 40867 41732 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90672g00006 14 58 MYB Transcription Factor Family AT5G14750 51.111 7.02e-15 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc90672g00006 Myb_DNA-binding 7.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90672g00006 - - adu:107482590 131.724