Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90672g00004 ATGGGGTGCCATGGTAGCAAGGAAAAAAGACCAGCAACAAGTGGGTATGGATCAATTGAAAGCCATAATCAAAGTAACCACACTCCTCTTCAAACTCAAACTCACACATCAGAACCAAAGAATCAGCCACAGGTTCAGCAAGTGCAAGTTCAAGCCACCGCCGCCGCCGCCGCCACCACCACATCGAAACCGCCTTCACAGAATGTGAGGCCAGTTCAGAAGTCTGACACAACCATTCTAGAGAAGCCATTTGAGGACATCAAGAAGCACTACACACTTGGAAAGGAATTAGGGAGAGGGCAATTTGGTGTGACATATCTCTGCACTGAGAACTCAACAGGGAACACTTATGCTTGCAAATCAATCTTGAAGAGGAAGCTTACTTCGAAAGCTGATAGGGATGATATGAGGAGGGAGATTCAGATCATGCAGCATCTTTCTGGGCAGCCAAACATTGTTGAATTCAAGGGTGCATTTGAGGACAGGTACTCTGTGCACCTTGTCATGGAGCTTTGTGCTGGTGGTGAATTGTTTGATAGGATCATTGCTCAGGGTCATTACTCTGAGAGAGCTGCAGCTTCCATCAAGGATGAGGGAGCAACACTTAAGGCCACTGATTTTGGATTATCTGTCTTCATTGAAGAAGGAAAGGTTTACCGCGATATGGTGGGGAGTGCCTACTATGTTGCCCCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATATCTGGAGTGCAGGCATCATGCTGTATATTCTCTTGAGTGGTGTACCTCCATTTTGGGCTGAAACTGAGAAGGGAATATTTGATGCCATATTAGAAGGTGTAATTGACTTTGAAAGCGAACCATGGCCATCAATATCAAATAGTGCTAAAGATCTAGTCAGAAAGATGCTGACACAGGACCCAAAGAAGCGGATCACCTCTGCTGAAGTCCTTGAACATCCATGGATCAGAGAAGGTGGAGAGGCATCTGATAAACCAATTGATAGTGCTGTCCTGTCTAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAAAAGCTTGCATTGAAGGTTATTGCTGAAAGTTTATCCGAAGAAGAGATTAAAGGCCTGAAAGCGATGTTTGCAAATATGGACACTGACAACAGTGGCACTATCACCTATGAGGAACTGAAGACAGGTTTGGCCCGAATTGGATCAAGCCTGTCTGAGGCTGAAGTGAAGCAACTTATGGATGCTGCTGATGTTGATGGGAACGGATCAATTGATTATATCGAATTCATCTCGGCGACAATGCACAGGCACAGGCTTGAACGAGATGAACAACTCTATAAAGCATTTCAGTATTTTGATAAAGATAGCAGTGGGTATATTACTAGAGATGAACTGGAAACTGCTATGACTCAGCATGGTATGGGTGATGAAGCTACTATAAAGGAAATAATTTCTGAGGTGGATACAGATAATGATGGAAGAATAAACTATGAGGAATTTTGTGCAATGATGAGAAGTGGAACACCACACCCGGGACAAGTACATTAA 1530 0.4373 MGCHGSKEKRPATSGYGSIESHNQSNHTPLQTQTHTSEPKNQPQVQQVQVQATAAAAATTTSKPPSQNVRPVQKSDTTILEKPFEDIKKHYTLGKELGRGQFGVTYLCTENSTGNTYACKSILKRKLTSKADRDDMRREIQIMQHLSGQPNIVEFKGAFEDRYSVHLVMELCAGGELFDRIIAQGHYSERAAASIKDEGATLKATDFGLSVFIEEGKVYRDMVGSAYYVAPEVLRRSYGKEIDIWSAGIMLYILLSGVPPFWAETEKGIFDAILEGVIDFESEPWPSISNSAKDLVRKMLTQDPKKRITSAEVLEHPWIREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAESLSEEEIKGLKAMFANMDTDNSGTITYEELKTGLARIGSSLSEAEVKQLMDAADVDGNGSIDYIEFISATMHRHRLERDEQLYKAFQYFDKDSSGYITRDELETAMTQHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGTPHPGQVH 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90672g00004 509 Gene3D - 329 501 - -
Stsc90672g00004 509 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Stsc90672g00004 509 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Stsc90672g00004 509 CDD STKc_CAMK 90 318 - -
Stsc90672g00004 509 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Stsc90672g00004 509 SMART efh_1 473 501 IPR002048 GO:0005509
Stsc90672g00004 509 SMART efh_1 366 394 IPR002048 GO:0005509
Stsc90672g00004 509 SMART efh_1 402 430 IPR002048 GO:0005509
Stsc90672g00004 509 SMART efh_1 438 466 IPR002048 GO:0005509
Stsc90672g00004 509 Gene3D Transferase(Phosphotransferase) domain 1 197 328 - -
Stsc90672g00004 509 ProSiteProfiles Protein kinase domain profile. 91 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90672g00004 509 FunFam Calcium-dependent protein kinase 1 327 502 - -
Stsc90672g00004 509 Gene3D Transferase(Phosphotransferase) domain 1 133 195 - -
Stsc90672g00004 509 ProSiteProfiles EF-hand calcium-binding domain profile. 470 504 IPR002048 GO:0005509
Stsc90672g00004 509 Pfam Protein kinase domain 91 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90672g00004 509 Pfam Protein kinase domain 198 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90672g00004 509 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Stsc90672g00004 509 ProSitePatterns EF-hand calcium-binding domain. 375 387 IPR018247 -
Stsc90672g00004 509 PANTHER SERINE/THREONINE-PROTEIN KINASE 199 494 - -
Stsc90672g00004 509 Pfam EF-hand domain pair 367 427 IPR002048 GO:0005509
Stsc90672g00004 509 Pfam EF-hand domain pair 436 499 IPR002048 GO:0005509
Stsc90672g00004 509 ProSitePatterns Protein kinases ATP-binding region signature. 97 124 IPR017441 GO:0005524
Stsc90672g00004 509 SUPERFAMILY Protein kinase-like (PK-like) 67 340 IPR011009 -
Stsc90672g00004 509 MobiDBLite consensus disorder prediction 16 75 - -
Stsc90672g00004 509 MobiDBLite consensus disorder prediction 1 77 - -
Stsc90672g00004 509 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Stsc90672g00004 509 SUPERFAMILY EF-hand 359 498 IPR011992 -
Stsc90672g00004 509 Gene3D Phosphorylase Kinase; domain 1 95 171 - -
Stsc90672g00004 509 FunFam Calcium-dependent protein kinase SK5 229 324 - -
Stsc90672g00004 509 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Stsc90672g00004 509 FunFam Calcium-dependent protein kinase 1 93 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90672g00004 Stsc-Chr90672 35363 39461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90672g00004 1 505 EF-hand Containing Proteins AT4G04720 70.055 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc90672g00004 Pkinase 5.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90672g00004 K13412 - gmx:100816859 804.283