Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90671g00006 ATGGCAATCCAACATCACAATCACCAACTACACCAAGAACAACTTGATGCCCTTTACTGCGACGAAGAACAAGAAGAATACCAAGAGTTCTCAGGTGAGAGTGATGTCACAACAAACCACGATGACGAAGATGATGATGATGATGATGATGGTGTCAACTTGAACTCCCATTCCCTTGAGCCTCTCCTCTTGTTGGAGCAGGACATGTTCTGGGAAGATGAAGAGCTCAACACCCTCTTCTCCAAAGAGAAGCTTCAGCATCAAGCCTATTTCAACAATGGCCATGATGTGGTGACACCATTGGAGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTCTTCTCTATGTGTGGCTCGTCGTGAAGCAGTTGAATGGATTCTCAAGGTGAATGCTCATTACGGATTCTCAGCTCTGACTGCAACACTTGCCGTTACTTATCTGGATAGGTTCCTCTTGAGCTTCCATTTTCAAAGGGAGAAGCCATGGATGATCCAGCTTGCCTCTGTCACTTGCATCTCTTTGGCTGCTAAAGTTGAAGAAACTCAAGTGCCTCTTCTCTTGGACCTTCAAGTGCAAGATGCCAAGTATGTGTTTGAGGCAAAGACTATACAGAAAATGGAGCTGCTGATTCTTTCCACCTTGAATTGGAAGATGCACCCTGTCACCCCACTCTCATTTCTGGATCACATTATAAGGAGGTTAGGACTCAAAACAAATCTTCACTGGCACTTCCTAAGGCGTTGTGAGAATCTTCTTCTCTCTTTGCTATTAGATTCAAGATTTGTTGGTTGTCTTCCTTCTGTGTTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTCATCACAGCACTACTCATGGAATGGAATACAAAAACCAGCTTCTTAATGTTCTCAACATTAACAAGGAGAAGGTAGATGAATGCTATAATGGCATTGTGGAGCTATGGAGTAGTAATGGTGATGGTGGTGGTGGTAGCAAGAAGAGAAAGCATGAGCAAATCCCTGGTAGCCCAAGTGGCGTAATTGATGCTGTGTTCAGCTCTGTTGATGGCTCCAACGATTCGTGGGCAGTGGTGGGGTCATCATTCTTATGTTCATCACCATCACAGGAGCCTCTCTTCAAGAAGAACAAACAACAACAATTGAAATTGTCTTCACTCAACAGGGTCATTGTCGGAATTGTTGGCACCACCCCATGA 1206 0.4411 MAIQHHNHQLHQEQLDALYCDEEQEEYQEFSGESDVTTNHDDEDDDDDDDGVNLNSHSLEPLLLLEQDMFWEDEELNTLFSKEKLQHQAYFNNGHDVVTPLEPSSSSSSSSSYSSLCVARREAVEWILKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLASVTCISLAAKVEETQVPLLLDLQVQDAKYVFEAKTIQKMELLILSTLNWKMHPVTPLSFLDHIIRRLGLKTNLHWHFLRRCENLLLSLLLDSRFVGCLPSVLATATMLHVIDQIHHSTTHGMEYKNQLLNVLNINKEKVDECYNGIVELWSSNGDGGGGSKKRKHEQIPGSPSGVIDAVFSSVDGSNDSWAVVGSSFLCSSPSQEPLFKKNKQQQLKLSSLNRVIVGIVGTTP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90671g00006 401 FunFam D3-type cyclin 113 220 - -
Stsc90671g00006 401 MobiDBLite consensus disorder prediction 23 53 - -
Stsc90671g00006 401 SUPERFAMILY Cyclin-like 112 220 IPR036915 -
Stsc90671g00006 401 CDD CYCLIN_AtCycD-like_rpt2 222 314 - -
Stsc90671g00006 401 ProSitePatterns Cyclins signature. 120 151 IPR006671 -
Stsc90671g00006 401 SMART Cyclin_C_2 222 352 IPR004367 -
Stsc90671g00006 401 FunFam CYCLIN D32 221 312 - -
Stsc90671g00006 401 CDD CYCLIN_AtCycD-like_rpt1 119 217 - -
Stsc90671g00006 401 Pfam Cyclin, C-terminal domain 222 322 IPR004367 -
Stsc90671g00006 401 Pfam Cyclin, N-terminal domain 118 219 IPR006671 -
Stsc90671g00006 401 Gene3D - 221 312 - -
Stsc90671g00006 401 PANTHER CYCLINS 76 315 IPR039361 -
Stsc90671g00006 401 SUPERFAMILY Cyclin-like 204 319 IPR036915 -
Stsc90671g00006 401 SMART cyclin_7 125 213 IPR013763 -
Stsc90671g00006 401 Gene3D - 119 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90671g00006 Stsc-Chr90671 39076 41175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90671g00006 1 317 Core Cell Cycle Gene Families AT4G34160 51.402 1.52e-103 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90671g00006 K14505 - gmx:547740 469.544