Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90671g00002 ATGTCAATCAGGGACCATACAAATTTTGTCAATTGCGTTAGATATTCTCCAGATGGGAGCAAGTTTATTACTGTGAGCTCAGATAGGAAGGGAATTGTATATGAGGGAAAAACAGGGGCCAAACTTGCAGAGTTGCCTTCAGAGGATGGTCACAAGGGCAGCATATATGCGGCTAGTTGGAGTCCTGACAGCAGACAGGTAGTTACTGTGTCTGCTGATAAGACTGCAAAAATATGGGACATTCTTGAGGACGGTAATGGAAAACTAGCCAAGACTTTGTCTTTTACAGAAACTGGTGGTGTGGAAGACATGCTTGTTGGTTGCCTTTGGCAGAATGCTCATCTGCTTACTGTCTCTCTTGGTGGCACCATTAACTTGTATGATGCTAAGGATCTAGATAAAAGCCCGTTAACCTTGTCCGGCCACATGAAGAATGTCACTGTTTTGAATCTGCTTCACAGAAGTGAAAAGATGCTGTTGTCTGGCAGCTATGATGGAGTGATCATTAGATGGATTCCTGGTGTTGGGTATAAAGGTAAGTTTGAGAGTAAACAATTTGGATTAATCAAATTGTTAGCAACCGGCGAAGAAGAAATTATTACTGCTGGATTTGACAACAAGGTATCCCGAGTTCCTCTTCATGAGGACGATTTTGGTCCTGCTGAGCAAGTGGATGTTGGAAGTCAGCCTAAGGATGTGAGTCTTGCAGCTAAAATCCCAGAACTTGCTCTCATTGCAATTGAGTCTGGTGTTGTCTTACTCAAAGGTTCAACAATTTTGTCAACTGTAAACCTGGGCTTTGTTGTGACTGCCTCTGCTATTTCACCTGATGGTAGTGAAGCAATTGTAGGCGGCCAAGACGGTAAGTTGCACATCTATTCTGTCTCAGGTGATACACTTACAGAAAAAAGTGTCCTTGAGAAGCACCGAGGTGCCATCAGTGTTATCAGATTTTCTCCAGATCTTACCATGTTTGCTTCCGCTGATTTGAATCGTGAAGCTGTTGTGTGGGATCATGAAACCAAAGAGGTGAAGCTTAATAACATGTTGTTTCACACTGCACGGGTTAACTGCCTAGCTTGGTCACCTGATAGCAAACTGATAGCCACCGGTTCACTTGATACTTGTGTCATTATATATGAAATTGGAAAGCCAGCAGCAAGCCGGAGAACCATAAAAGGTGCTCATTTAGGTGGAGTTTATGGGTTAACTTTTGTTGATAATGACAGAGTTGCCAGTTCAGGTGAAGATGGTTGTATTCGTGTTTGGACCTTACCTTCTGAATAA 1287 0.4281 MSIRDHTNFVNCVRYSPDGSKFITVSSDRKGIVYEGKTGAKLAELPSEDGHKGSIYAASWSPDSRQVVTVSADKTAKIWDILEDGNGKLAKTLSFTETGGVEDMLVGCLWQNAHLLTVSLGGTINLYDAKDLDKSPLTLSGHMKNVTVLNLLHRSEKMLLSGSYDGVIIRWIPGVGYKGKFESKQFGLIKLLATGEEEIITAGFDNKVSRVPLHEDDFGPAEQVDVGSQPKDVSLAAKIPELALIAIESGVVLLKGSTILSTVNLGFVVTASAISPDGSEAIVGGQDGKLHIYSVSGDTLTEKSVLEKHRGAISVIRFSPDLTMFASADLNREAVVWDHETKEVKLNNMLFHTARVNCLAWSPDSKLIATGSLDTCVIIYEIGKPAASRRTIKGAHLGGVYGLTFVDNDRVASSGEDGCIRVWTLPSE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90671g00002 428 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Stsc90671g00002 428 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 425 - -
Stsc90671g00002 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 81 - -
Stsc90671g00002 428 Pfam WD domain, G-beta repeat 3 29 IPR001680 GO:0005515
Stsc90671g00002 428 Pfam WD domain, G-beta repeat 49 80 IPR001680 GO:0005515
Stsc90671g00002 428 Pfam WD domain, G-beta repeat 352 380 IPR001680 GO:0005515
Stsc90671g00002 428 Pfam WD domain, G-beta repeat 395 423 IPR001680 GO:0005515
Stsc90671g00002 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 382 IPR001680 GO:0005515
Stsc90671g00002 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 382 - -
Stsc90671g00002 428 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 4 426 IPR011047 -
Stsc90671g00002 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 428 - -
Stsc90671g00002 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 347 IPR001680 GO:0005515
Stsc90671g00002 428 Gene3D - 1 134 IPR015943 GO:0005515
Stsc90671g00002 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 338 - -
Stsc90671g00002 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 3 44 IPR001680 GO:0005515
Stsc90671g00002 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 81 IPR001680 GO:0005515
Stsc90671g00002 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 428 IPR001680 GO:0005515
Stsc90671g00002 428 SMART WD40_4 299 338 IPR001680 GO:0005515
Stsc90671g00002 428 SMART WD40_4 256 294 IPR001680 GO:0005515
Stsc90671g00002 428 SMART WD40_4 38 80 IPR001680 GO:0005515
Stsc90671g00002 428 SMART WD40_4 1 35 IPR001680 GO:0005515
Stsc90671g00002 428 SMART WD40_4 385 424 IPR001680 GO:0005515
Stsc90671g00002 428 SMART WD40_4 86 128 IPR001680 GO:0005515
Stsc90671g00002 428 SMART WD40_4 132 172 IPR001680 GO:0005515
Stsc90671g00002 428 SMART WD40_4 343 381 IPR001680 GO:0005515
Stsc90671g00002 428 Gene3D - 135 426 IPR015943 GO:0005515
Stsc90671g00002 428 FunFam Actin-interacting protein 1 155 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90671g00002 Stsc-Chr90671 9013 14273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90671g00002 3 327 Eukaryotic Initiation Factors Gene Family AT2G46290 25.000 5.67e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90671g00002 K24736 - gmx:100798693 711.449