Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90668g00008 ATGCATAACAATGACAACAATGATGCTGCTTCTTCAGTTTATGGAACCTCAAACTCAAAGTCACCACTACCACCTTTGAACTGTGGTTCCCCTGAAATAAGGTTCATGCCAAGCCCTAACAAGCCCCCAAGAATTCCCAATTCAAATGCAAACCTTGTCAGAAGGAAATCACTTTCAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAGCCTTATCCCATTGATGGTTCTGTTTTGGATGAGAGTAGTAATGTTAATGGCATTTCAACTTTGCAAGAACAGTTAGCTGGTAGTGTTAACTCACCATATAGGAACTCATTCAAGGGATCATCCCCTAATAACAAACCTGGGACTGTTAATAGAACAGTTTCCATCACCGCTCCCATCACTCCCAAGACGCCTTTGATGGCGTCTCCCGGTCCTGCTGGGGAGGATGAGGATGAAATCATTTACAAGAAAGTAGAATTGAGTAAAGAGAAGCGTAAGAGACTGACCGCTATGGTTTTGGTTGAGTGTTTTGTGTTTGTGTGCCTTGCTGGTACCTTGATAGCTAGCTTGACAGTTAAGAAGGTCAGGGCGACGATGATTTGGGGGTTGGGGATTTGGAGATGGTGTGTGCTTGTGTTGGTGACATTTTGTGGAATGTTAGTTACAAGATGGTTTATGCACATTGTTGTTTTCTTGATTGAGATGAACTTTCTGCTGAGGAAAAAGGTGCTCTATTTTGTCCATGGGCTCAAGAAATGTGTCCAGGTCTTCATTTGGCTCGGTTTAGTTCTTCTCACATGGGTGCTGCTAATCAATCGTGGCGTGCCGCGGTCTAAATTAGCCTCGAAGATCTTGGATGGTGTGACATGGACTCTGGTTTCTCTTCTAATTGGAGCATTCTTGTGGATGATAAAGACATTGTTGCTGAAGATTTTGGCATCGAGTTTCCATGTCAAGTCTTTCTTTGATCGGATTCAGGAATCGATATTCCATCAGTACATTTTGCAGACTCTTTCTGGGCCTCCTCTTATCGAAGAGGCCGAGAAGGTTGGGGGATCATTAAGTATTGGTCAATTTAGCTTCAGGAGCACAACAGGTAAAGGTGGTACAAAGAAAGAGGTTATTGACATGTCAAAGCTTCATAAGATGAAACAAGAGAAAGTTTCGGCCTGGACTATGAAGCTTTTGATAGATGCTGTGAGAAATTCAGGCCTATCCACCATCTCTAATTCGCTAGATGAAAGTTTCTACGATGGAGCGACTGAGCAAACTGATAAAGAGATTACAAATGAAATGGAAGCCACTGCTGCTGCCTATATCATCTTCAGGAATGTTGCTTCCCCCGGTTGCACGTATATTGATGAGTATGAACTGAGGAGGTTTATGATCAAGGAAGAAGTTGATTTAGTATATCCTCAATTGGCAAGTACAGAGACAGGGCAAATTACTAGAAAGTCATTAGCAGATTGGGTGTTGAAGGTATATCAAGAGCGAAAAGCATTGGCGCATGCCTTAAGCGATACGAAAACAGCCGTAAGACAATTGAACAAACTTGTGACAGGGATCCTAGTGGTGGTGACCATAGTAGTTTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTTGTTTTCCTCTCGTCGCAGCTAATACTCGCCACTTTCATGTTTGGAAATACATGCAAGAACATTTTTGAAGCTATCATCTTCGTGTTTGTGGTGCATCCGTTTGATGTTGGTGACCGATGCGTGGTAGATGGCGTGGAGTTATTGGTTGAAGAAATGAACATACTAACAACAGTGTTCTTGAAGCTGAATAATGAAAAGGTGTACTATCCAAACTCAGTTCTTGCCATGAAACCAATTAGCAATTATTACAGAAGCCCGGATATGGGTGATGGAATAGAATTCGTCATTGATTTCTCGACGCCAGCAGAGAAGATTGGTGCACTGAAAGAAAAAGTAAAGAGGTACTTGGAGAGGAATCCACAATACTGGCATCCTAATCATGGGTTACAAGTGAAGGAGATTGAGAATGTAAACAAGCTGAAGATGGGTGTGTATGTGGTACACACAATGAACTTTCAAGAGTTTGGGGAGAAGAACAAGCGAAGAACCGAACTGGTGATTGAATTAAAGAAGATACTTGAAGAGCTAGATATCAGATACAACCTTCTTCCACAAGCTGTTCATGTTAGCCATGTTGAATCAAATACAACTCCACTCAAGAGATGA 2232 0.4198 MHNNDNNDAASSVYGTSNSKSPLPPLNCGSPEIRFMPSPNKPPRIPNSNANLVRRKSLSRSVYSKPKSRFGEQPYPIDGSVLDESSNVNGISTLQEQLAGSVNSPYRNSFKGSSPNNKPGTVNRTVSITAPITPKTPLMASPGPAGEDEDEIIYKKVELSKEKRKRLTAMVLVECFVFVCLAGTLIASLTVKKVRATMIWGLGIWRWCVLVLVTFCGMLVTRWFMHIVVFLIEMNFLLRKKVLYFVHGLKKCVQVFIWLGLVLLTWVLLINRGVPRSKLASKILDGVTWTLVSLLIGAFLWMIKTLLLKILASSFHVKSFFDRIQESIFHQYILQTLSGPPLIEEAEKVGGSLSIGQFSFRSTTGKGGTKKEVIDMSKLHKMKQEKVSAWTMKLLIDAVRNSGLSTISNSLDESFYDGATEQTDKEITNEMEATAAAYIIFRNVASPGCTYIDEYELRRFMIKEEVDLVYPQLASTETGQITRKSLADWVLKVYQERKALAHALSDTKTAVRQLNKLVTGILVVVTIVVWLLLMEIATTKVLVFLSSQLILATFMFGNTCKNIFEAIIFVFVVHPFDVGDRCVVDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLAMKPISNYYRSPDMGDGIEFVIDFSTPAEKIGALKEKVKRYLERNPQYWHPNHGLQVKEIENVNKLKMGVYVVHTMNFQEFGEKNKRRTELVIELKKILEELDIRYNLLPQAVHVSHVESNTTPLKR 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90668g00008 743 MobiDBLite consensus disorder prediction 103 124 - -
Stsc90668g00008 743 MobiDBLite consensus disorder prediction 1 49 - -
Stsc90668g00008 743 FunFam Predicted mechanosensitive ion channel 575 624 - -
Stsc90668g00008 743 SUPERFAMILY Sm-like ribonucleoproteins 565 624 IPR010920 -
Stsc90668g00008 743 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 48 735 IPR016688 -
Stsc90668g00008 743 PIRSF Memb_At2g17000 3 741 IPR016688 -
Stsc90668g00008 743 Pfam Mechanosensitive ion channel 516 721 IPR006685 GO:0016020|GO:0055085
Stsc90668g00008 743 Gene3D - 575 624 IPR023408 -
Stsc90668g00008 743 MobiDBLite consensus disorder prediction 1 25 - -
Stsc90668g00008 743 MobiDBLite consensus disorder prediction 58 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90668g00008 Stsc-Chr90668 58506 61282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90668g00008 15 732 Mechanosensitive Ion Channel Family AT5G12080 59.141 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90668g00008 K22048 - gmx:100803107 1139.41