Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90667g00023 ATGGCTGATGAGAAGAAGCTTCAACACTGTCAAGCTGGAATCACGAGAATACCCTCTTTCAACCCAACATCCATTTACGGCAACTATTCCTGTGAGGTTGTACGGAAAAACGGTGAAGTAGTACCGGTGAAAGAAAGTTCATCATCAAGTAGTACAATAAGTAGCACCATCACAACGGAGAAGACACCCTCAGCGCTTATTGCTAACTCAACAACAATGTCATCACCAACAACAACAACTTCTTTCAAGAAACCAAGAATAGAAGAAGAAGGCTCATCATCAAACCAACAAGAACTATTCATGAATTTCTCCACTTTCTTAAGAAGACCTTCAATGCTTCTTGCTAATAATAATTGTGAGAGTAACAATAATAAAGAGGAACTACCGTTTCCTCAAAAGCAGTGCAAATCGGTTGATCATAACAGTAACAGTAACAGTAATAATAAGAAGAAGAAGAGGAAAGTGGTTGATACTGGGTTCTGTACCAACGATCCCTTGATAGAATATTCTTCTGTGTGCTCGCTTGGAGCCTCAAACAACACTGACATTTCTAGCCCGAAACAAGAGCTCGATGATTATTCCATCTACTTAAGCGAGAACAATGATGAAGACATAGAAGACGATGTTATGATGAAGGAGATTAAGAATGCCAGGCGAGAGGGCAACTATAATAATGGAGTCAGAAGAAGGAAGAATGCTGAGACTCACAATTTATATGAAAGGCGGCGAAGAGACAAGATCAACAAGAAACTTCGCATACTCAAAGATCTCATACCCAACTGTAATAAGGTGGACAAGGCTTCACTGCTTGATGATGCCATTGAATATCTCAAGGCCCTAAAGCTTCATTTACAGATTATGACAATGGGAACTGGGCTATGCATGCCTCCATTGATGCTACCTACTTCTTCCCCTCAGCATTTGATGAACACAACAAGCCAATTACAACATTTAATGGGTTTCAGGCATGGAATTAACATCCCTTTATGCAACATTATGCCTCACCAGCAGTTTCCTAGTATTCCACCAATGCCACTGCCTCCAGCAGCAGTTGGCATTAGTAACAATAATAATAATAATAATGGAGTTGGCATGTTTGGTTTCCCTAACCAATTCTTACCCATGATGACGCCAAATCACCCCATGTCTCATGCACCTTTCACTACTACTACTACTACTATTCATCCCATGGTTGGAAATAATAAAATTAATAATGATAATATTTTTACACAAGCACCACTTCAAACAACCAATAATGTTTCAGCTTCATAA 1272 0.3939 MADEKKLQHCQAGITRIPSFNPTSIYGNYSCEVVRKNGEVVPVKESSSSSSTISSTITTEKTPSALIANSTTMSSPTTTTSFKKPRIEEEGSSSNQQELFMNFSTFLRRPSMLLANNNCESNNNKEELPFPQKQCKSVDHNSNSNSNNKKKKRKVVDTGFCTNDPLIEYSSVCSLGASNNTDISSPKQELDDYSIYLSENNDEDIEDDVMMKEIKNARREGNYNNGVRRRKNAETHNLYERRRRDKINKKLRILKDLIPNCNKVDKASLLDDAIEYLKALKLHLQIMTMGTGLCMPPLMLPTSSPQHLMNTTSQLQHLMGFRHGINIPLCNIMPHQQFPSIPPMPLPPAAVGISNNNNNNNGVGMFGFPNQFLPMMTPNHPMSHAPFTTTTTTIHPMVGNNKINNDNIFTQAPLQTTNNVSAS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90667g00023 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 280 IPR011598 GO:0046983
Stsc90667g00023 423 MobiDBLite consensus disorder prediction 118 154 - -
Stsc90667g00023 423 Pfam Helix-loop-helix DNA-binding domain 234 280 IPR011598 GO:0046983
Stsc90667g00023 423 MobiDBLite consensus disorder prediction 118 144 - -
Stsc90667g00023 423 PANTHER TRANSCRIPTION FACTOR PIF3 123 393 IPR044273 GO:0003700|GO:0006355
Stsc90667g00023 423 Gene3D - 223 281 IPR036638 GO:0046983
Stsc90667g00023 423 SMART finulus 237 286 IPR011598 GO:0046983
Stsc90667g00023 423 CDD bHLH_AtPIF_like 231 293 IPR047265 -
Stsc90667g00023 423 MobiDBLite consensus disorder prediction 70 95 - -
Stsc90667g00023 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 304 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90667g00023 Stsc-Chr90667 136409 138547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90667g00023 100 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.220 1.80e-31 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90667g00023 HLH 4.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90667g00023 K12126 - gmx:100818543 191.045