Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90667g00010 ATGGGTAGAAAAGCCTCTAGCTCTTCATCTTCCTCTTCATCTTTCAACCCTTCTTTCTCAACTGCTTCTTCACACCTTCATGCTGATCTTAGTCTTGGACTCAGCATTTCTTCCACTCATCAACATCTTCCATCTTCTGTCTCAAGGGGGCAGTGGCAAATCCAATCATCATCATCATCACTTGCAAGTAGTTCACAACAATTAGGTGGTGAAGGAAATGATTGCAGTGACCATAATACCTTCTTTGTGAAAGTGTACATGGAAGGCATTCCAATTGGCAGAAAACTCAACCTTTTAGCTCATGATGGCTACCATCAGTTGGTTAAGGCTCTTGAACAAATGTTTGACACTACCATACTCTGGGGAACTGAGTTAGATGCAGTGCAAGGAGAGAGGTGCCATGTGCTAACTTATGAGGATGGTGAAGGAGATTTGATTATGGTTGGAGATGTGCCTTGGGAAATGTTTTTATCAGCTGTAAAGAGATTGAAGATCACCCGGGTTGACACATTTGGCTATTGA 522 0.4234 MGRKASSSSSSSSSFNPSFSTASSHLHADLSLGLSISSTHQHLPSSVSRGQWQIQSSSSSLASSSQQLGGEGNDCSDHNTFFVKVYMEGIPIGRKLNLLAHDGYHQLVKALEQMFDTTILWGTELDAVQGERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVDTFGY 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90667g00010 173 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 55 168 IPR003311 GO:0005634|GO:0006355
Stsc90667g00010 173 Gene3D - 74 172 - -
Stsc90667g00010 173 ProSiteProfiles PB1 domain profile. 80 170 IPR000270 GO:0005515
Stsc90667g00010 173 SUPERFAMILY CAD & PB1 domains 76 165 - -
Stsc90667g00010 173 Pfam AUX/IAA family 72 167 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90667g00010 Stsc-Chr90667 46107 47863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90667g00010 84 165 B3 DNA Binding Superfamily AT4G23980 39.024 3.97e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc90667g00010 AUX_IAA 5.5e-29 CL0072