Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90666g00020 ATGGACAAAGGAGGATGGGGTCTCACCCTTGAAACTTGCTCCTCTCCAACCATCCCATTCTTTCATTCTTCTTCTTCTGCCGCCTCTTCTTCTTCCTCCAAGTTGTTGCAGCCGCCACCACCGCCGCATAACAATAACATGTTTCCGCTCTTGGGATTCCCCGTCAACCTTACTCGCTCCGCCGATGATCATAACAACGCCGACGATAGCAACCGCAAGGTGGTTGTTGACTTCTTTTCCGATAATAGGAACAAGGCACAAGACCACCAGCAGCATGTCAAGCCTAACATCTCCGTCAAGAAGGAGATTGATATACCTTCCACCAAAGTTTATACGGGCTTGCAACTGCTGACTACCGGCAACACCGGGAGCGATCAATCTACGGTGGATGATGGAGTATCATCAGATGCTGAAGATAAGAAAGCCAAGGCCACTGAGTTAGCGGTGTTGCAAGTGGAGCTTGAACGCATGAATGCTGAGAACCATAAGCTGAAAGAGATGCTCAACCACGTCACCGGTAACTACACCGCCTTGCAAATGCATCTTCTCACACTAATGCAACAACAACAACAACACACTCCCAAAGATGAGCAGCTTGTTGAAGGAAAACTAGTAGTAGGCGATGAAGCAAGACAGTTGCTTGATTTAGGAAATAATGATCAGCAAGCATCTGATTCTTCTTCTGACGAAAGAACGCGATCAAACACACCCCACGCCCAACTTGGAATCAGCAGGAACAACAAGAACGAGAGGGAAGACAGTCCAGACTCAGAGTCACAACCTTGGGCTCCCAACAAGCACCAAAAAACCAGTAATAATTACCCCTCAAGTAGTAACTCGGTGGATCAATCCTCTTCTGAAGCCACCATGAGAAAAGCCCGCGTCTCAGTCCGTGCCCGCTCAGAAGCTCCCATGATCAGTGATGGTTGCCAGTGGCGAAAATATGGACAAAAGATGGCAAAGGGAAATCCATGTCCTCGAGCTTATTACAGATGCACTATGGCCGTTGGTTGCCCCGTCCGCAAACAAGTTCAGCGTTGTGCTGAGGACAGAACTATTCTGGTGACCACATACGAAGGAACACACAGCCATCCGCTACCACCGGCCGCCATGGCCATGGCATCAACCACCACAGCAGCTGCCACCATGTTGCTATCAGGCTCCATGTCAAGTGCAGATGGAATCATGAACCCCAACCTCCTAGCAAGAGCTATTTTCCCATCATGCTCTACTTCTTCTTCAAGCATGGCAACACTCTCGGCTTCAGCACCCTTCCCAACTGTCACATTAGACCTCACACAAAACCCATCAACAACGAATGCTAATACTACTTCCACTCCTCCGTCATTGCAACCCCAAATGAGGCACCACCCTACTCTTAACGCTGTCCCCTTGTTCCAGCTACCTAATTTCCAAGGGCACCCCCAGAACTTTGGGGCACCCTCCCACTCTCAAGCCCTATATAACCAATCCAAATTCTCCGGTCTTCAGTTGTCTCAAGAAGCTGCTGCTTCTTCCCAATTGGGAATCCAAGCTCCAAGGCCACCTTTGCACCACAACCAACAACAACAACCGGCGCCATCGCTGGCTGATTCCGTCACGGCAGCCATCACCACCGATCCTAACTTCACCGCGGTTCTCGCAGCTGCCATCTCCTCCATCATCGGAGGTAATAATAATAATAATAATCAGCAAAACAGCACAGGAGACGGCAACAACAGCAATCCTAGTATGAGCAACAAGACAACAATAAGCAGCTTTTCGGGAAATTAA 1773 0.4924 MDKGGWGLTLETCSSPTIPFFHSSSSAASSSSSKLLQPPPPPHNNNMFPLLGFPVNLTRSADDHNNADDSNRKVVVDFFSDNRNKAQDHQQHVKPNISVKKEIDIPSTKVYTGLQLLTTGNTGSDQSTVDDGVSSDAEDKKAKATELAVLQVELERMNAENHKLKEMLNHVTGNYTALQMHLLTLMQQQQQHTPKDEQLVEGKLVVGDEARQLLDLGNNDQQASDSSSDERTRSNTPHAQLGISRNNKNEREDSPDSESQPWAPNKHQKTSNNYPSSSNSVDQSSSEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHSHPLPPAAMAMASTTTAAATMLLSGSMSSADGIMNPNLLARAIFPSCSTSSSSMATLSASAPFPTVTLDLTQNPSTTNANTTSTPPSLQPQMRHHPTLNAVPLFQLPNFQGHPQNFGAPSHSQALYNQSKFSGLQLSQEAAASSQLGIQAPRPPLHHNQQQQPAPSLADSVTAAITTDPNFTAVLAAAISSIIGGNNNNNNQQNSTGDGNNSNPSMSNKTTISSFSGN 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90666g00020 590 Coils Coil 140 174 - -
Stsc90666g00020 590 MobiDBLite consensus disorder prediction 215 244 - -
Stsc90666g00020 590 MobiDBLite consensus disorder prediction 558 590 - -
Stsc90666g00020 590 SMART WRKY_cls 306 366 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90666g00020 590 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 116 567 IPR044810 GO:0003700
Stsc90666g00020 590 MobiDBLite consensus disorder prediction 121 140 - -
Stsc90666g00020 590 ProSiteProfiles WRKY domain profile. 301 367 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90666g00020 590 Pfam WRKY DNA -binding domain 308 365 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc90666g00020 590 MobiDBLite consensus disorder prediction 516 531 - -
Stsc90666g00020 590 MobiDBLite consensus disorder prediction 29 49 - -
Stsc90666g00020 590 FunFam probable WRKY transcription factor 31 291 368 - -
Stsc90666g00020 590 MobiDBLite consensus disorder prediction 430 456 - -
Stsc90666g00020 590 MobiDBLite consensus disorder prediction 511 531 - -
Stsc90666g00020 590 MobiDBLite consensus disorder prediction 215 300 - -
Stsc90666g00020 590 Gene3D WRKY domain 291 368 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc90666g00020 590 MobiDBLite consensus disorder prediction 258 291 - -
Stsc90666g00020 590 SUPERFAMILY WRKY DNA-binding domain 299 367 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90666g00020 Stsc-Chr90666 164536 166885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90666g00020 53 575 WRKY Transcription Factor Family AT1G62300 51.537 3.64e-140 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc90666g00020 WRKY 1.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90666g00020 - - gmx:100802124 589.341