Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90666g00007 ATGACCACTTCCACAAATAATCATCATAATAATAATACCAACACTTGTGCTTTCGTGCTTGACAACAATACTGCTACTACCACTGCTACTACTGGGTTAGGGTATTATTTCATGGACAACATCAACAATGGAAGCTCTTCTTCCTCTTCTCCTTCTTCTGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGCCTCTTGGCTGCTTACGTCAGTTGTCAAAAGGTTGGAGCACCAGCTGAAGTGGTGGCAAGGTTAGAAGCAGCATGTGCATCTGCCATGTCAATGGCAGCAGCAGGAGACACATCAGCTTGCTTAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTCACAAAGTACGAGCAAGAACTTTCAAAACCCTTAAAGGAAGCCATGATCTTCCTTCAAAGGATGGAGTCCCAGCTCAAGAATCTCACCATCTCTTCTTCTCGAGACCTTGGTAGCAACGAGGCAATTGATAGGAACAATGGATCATCTGAAGAAGATGTTGATCTGCAAAGCCTAATAGATCCTCAGGCAGAGGACAGGGAATTGAAGGGTCAGCTTCTTCGCAAGTACAGCGGCTACCTGGGCAGCCTGAAGCAAGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTTCCCAAAGAAGCAAGGCAACAATTACTTGAATGGTGGGGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCACTAGCAGAATCCACTGGTTTGGATCAGAAGCAGATTAACAATTGGTTTATTAATCAGAGGAAACGTCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTGGATCCAACCCATCCACACTATTACATGGATAATGTTCTTGCCAATCCATTTTCAATGGATCTCCCATCCAACACAATGCTCTAG 936 0.4541 MTTSTNNHHNNNTNTCAFVLDNNTATTTATTGLGYYFMDNINNGSSSSSSPSSAVKAKIMAHPHYHRLLAAYVSCQKVGAPAEVVARLEAACASAMSMAAAGDTSACLGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMIFLQRMESQLKNLTISSSRDLGSNEAIDRNNGSSEEDVDLQSLIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWGRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPTHPHYYMDNVLANPFSMDLPSNTML 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90666g00007 311 Gene3D - 217 279 - -
Stsc90666g00007 311 MobiDBLite consensus disorder prediction 162 181 - -
Stsc90666g00007 311 SMART KNOX1_2 53 97 IPR005540 GO:0003677|GO:0005634
Stsc90666g00007 311 SMART KNOX2_2 104 155 IPR005541 GO:0003677|GO:0005634
Stsc90666g00007 311 Pfam KNOX2 domain 108 154 IPR005541 GO:0003677|GO:0005634
Stsc90666g00007 311 Pfam ELK domain 192 213 IPR005539 GO:0003677
Stsc90666g00007 311 FunFam Homeobox protein knotted-1-like 2 217 279 - -
Stsc90666g00007 311 ProSiteProfiles 'Homeobox' domain profile. 212 275 IPR001356 GO:0003677
Stsc90666g00007 311 ProSitePatterns 'Homeobox' domain signature. 250 273 IPR017970 GO:0000981|GO:0006355
Stsc90666g00007 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 49 281 - -
Stsc90666g00007 311 CDD homeodomain 224 276 IPR001356 GO:0003677
Stsc90666g00007 311 Pfam KNOX1 domain 54 93 IPR005540 GO:0003677|GO:0005634
Stsc90666g00007 311 SUPERFAMILY Homeodomain-like 214 289 IPR009057 -
Stsc90666g00007 311 SMART ELK_2 192 213 IPR005539 GO:0003677
Stsc90666g00007 311 ProSiteProfiles ELK domain profile. 192 212 IPR005539 GO:0003677
Stsc90666g00007 311 Pfam Homeobox KN domain 232 271 IPR008422 GO:0003677|GO:0006355
Stsc90666g00007 311 SMART HOX_1 214 279 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90666g00007 Stsc-Chr90666 61954 66074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90666g00007 55 311 Homeobox Transcription Factor Family AT1G62360 80.534 4.86e-135 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc90666g00007 KNOX2 6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90666g00007 - - gmx:100805837 467.618