Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90666g00005 ATGGCACTAATGCAGCGCCTAGCTAGAACAGCACGCCCGCTTCGATCTCATTCTCTCTCTTCCCTCCGAAACCTAACCTCTCGCCCTCATTCCCCTTCTCTTCTTCACAAATCGGCACTTGCTTCGGTCGCCGCGCCTCAAGTTTGGGGATCCGGAGCCTCACGTGATGACTATCAGGTACCGTATTCGTTACTTCCGGCTGTGTTAGCTGGCGTTTTCGGAATTGGATTGGCGGAAACGGTGTATGCTGATGCGGATCACGGTGGCGTTGCCGGCGGCGAGGATGTGCACGGAGTTGCGAAGAAAGAACGCGAGCGCATTGAGGAGTTGCTTAGGAAGAAAGGAGTTCGTTATGGTTCTTATCCTCGCTTCACTGTTGCTGTTAAAGGACAAAAGGTCAGTGTTAAGTTTCAGATACCTCCTGCTTGTGAAGTTCCGCAACTTATTGCAAATCTCGCAACAAATCTTGGACTGAAAGCTGAAGGGAATGGAGGTGGATCAGATATGCTATTGCGATCTTGGGACAGCACAGTGGCTTGGCAGCTTGCCCTTACTCATCCGTCCAAGAAAAAGCTTATTCACGAGGAGGATCCATCTTCAGCAAATATAAATGGACCTGATGGAGATCTTTGCATACTCTTTTTCCATTCTCTCATTGGCTCAGATAAAGCTGAAATTGAATTTATTAAGCAAGGGAACTTGAGTCCTGAAGAGCTTGATGCTTTCATCTCTGTTTTACAATTAGCTGGTAGCAAGATGGGACAAAGAAGTGCCCCCCTGGATAGGAAGCAAAGGGACGAGACTGAGCAGTCGCCATCTGTAGATAAATCTATTTCTAGTCTTGAGGCCATGGGAGTGAGAATTTATGGATTGAATGAACCCATAGGTATATCAAATGGTGAGGTATCATGGGACAACATTGCTGGATATGAACATCAAAAACGAGTAATAGAAGATACAATACTGTTGGCTTTGCATAGTCCTGAAGTATATGACAATATTGCAAGAGGGACTCGTCATAAGTTTGAGTCAAATCGCCCTCGAGCTGTGCTGTTTGAAGGTCCACCAGGTACAGGGAAAACTTCTTGTGCTCGTGTTATTGCCAATCAAGCGGGCGTCCCTTTGCTCTATGTTCCACTTGAGGCCGTAATGTCTGAATTCTACGGTAAAAGTGAACGCCTTCTAGGAAAAGTGTTTTCACTTGCAAATGAACTTCCTAATGGTGCTATTATATTTCTGGATGAGATTGATTCTTTTGCTGCTGCTCGGGATAATGAAATGCATGAAGCTACAAGGAGAATATTGTCAGTATTGTTGCGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTGGTCGTGATTGCTGCTACCAATAGAAAGGAGGACCTTGACCCTGCATTAATCAGCCGGTTTGATACTATGATCCCTTTTGGCCTACCTGATCATCGTAATCGTCAGCAAATAGCATCCAAATATGCGAAGCATCTAACCAAACCTGAACTAGATGAACTTGCCAGAGTTACAGAAGATATGTCCGGAAGAGACATTCGTGATGTTTGTCAGCAAGCAGAACGATCATGGGCATCAAAGATTATTCGAGGACAAGTATCCAAAGATGGTGAACAAGAAAGTCTTCCACCTTTGCAAGAATATGTAGAGTGTGCCACAATTCGGCAAAACTCGCTGCTCAGTGCTGCTGCTGGCAGGAATTTCCGAAATCATTCCCATCTCAGGATGGCAACGGACTGA 1749 0.454 MALMQRLARTARPLRSHSLSSLRNLTSRPHSPSLLHKSALASVAAPQVWGSGASRDDYQVPYSLLPAVLAGVFGIGLAETVYADADHGGVAGGEDVHGVAKKERERIEELLRKKGVRYGSYPRFTVAVKGQKVSVKFQIPPACEVPQLIANLATNLGLKAEGNGGGSDMLLRSWDSTVAWQLALTHPSKKKLIHEEDPSSANINGPDGDLCILFFHSLIGSDKAEIEFIKQGNLSPEELDAFISVLQLAGSKMGQRSAPLDRKQRDETEQSPSVDKSISSLEAMGVRIYGLNEPIGISNGEVSWDNIAGYEHQKRVIEDTILLALHSPEVYDNIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEAVMSEFYGKSERLLGKVFSLANELPNGAIIFLDEIDSFAAARDNEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDTMIPFGLPDHRNRQQIASKYAKHLTKPELDELARVTEDMSGRDIRDVCQQAERSWASKIIRGQVSKDGEQESLPPLQEYVECATIRQNSLLSAAAGRNFRNHSHLRMATD 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90666g00005 582 Gene3D - 480 542 - -
Stsc90666g00005 582 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 274 524 - -
Stsc90666g00005 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 528 IPR027417 -
Stsc90666g00005 582 SMART AAA_5 346 481 IPR003593 GO:0016887
Stsc90666g00005 582 MobiDBLite consensus disorder prediction 258 272 - -
Stsc90666g00005 582 CDD RecA-like_protease 335 477 - -
Stsc90666g00005 582 ProSitePatterns AAA-protein family signature. 451 470 IPR003960 GO:0005524|GO:0016887
Stsc90666g00005 582 Gene3D - 301 479 IPR027417 -
Stsc90666g00005 582 MobiDBLite consensus disorder prediction 254 277 - -
Stsc90666g00005 582 Pfam ATPase family associated with various cellular activities (AAA) 350 478 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90666g00005 Stsc-Chr90666 43643 48096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90666g00005 346 546 Calmodulin-binding Proteins AT3G56690 35.407 1.80e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90666g00005 - - gmx:100803362 841.647