Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90666g00001 ATGAGTCAACTCGGCGCTATTCTTCAGGAATCGCTGCGGACTCACACGGAGCCGAGGACCATTCTCGGATTGTTGACGGAGCAAATGGACGCTGCTTCCGCCTCCGCCGATGGAGCGCCTCGCACCAGGACCAGGCGCACCTTCAAGGACCGCTTAGGATTCATCGGCATAGGCTGTTGCGGTGCCACGTGGCGATTCCGTTCCGATTCCATAACGGTCAGGCACGAAGAACAAGAACAACAGCAGCTCCAGCAGCAACAACCACAGCAACAGCACCAACCGCTTCTTCTTGAAACGAATCCGCCTCGAGATCCGAACCGTTTTGGACCGGACTGCCTCTCTCCGACTCCGGCCAGTTCAGGTATGAACCTCGCGGCGGCGTTGGCGGCTGAGCGGCAGCTCCGGGGACCGCCACCGGAGGCGGAGGTACGTGAGACAAGAGGAAGGAGTAGTGTGCCAGGGACGCCGTGGAGAGTGTCCCTGATGAGGCTGCTGGAGGAAACAGACGGCGGCGATGCGGAGATTAGTGCGGCGGGGAAGGCATCGGAGGAAGAGAAGTTAAGTGTTGGTGGTGGAGGTGGAGGTGGTGTGGGGAATGATTGGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCGGCGTTCATACCATGTGGTCACACTTTTTGCAGGGTTTGTTCAAGGGAGCTCTGGCTCAACCGAGGCTCTTGTCCCCTTTGCAATCGTTCCATTCTCGAGATTCTCGACATTTTCTGA 756 0.5833 MSQLGAILQESLRTHTEPRTILGLLTEQMDAASASADGAPRTRTRRTFKDRLGFIGIGCCGATWRFRSDSITVRHEEQEQQQLQQQQPQQQHQPLLLETNPPRDPNRFGPDCLSPTPASSGMNLAAALAAERQLRGPPPEAEVRETRGRSSVPGTPWRVSLMRLLEETDGGDAEISAAGKASEEEKLSVGGGGGGGVGNDWVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 251
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc90666g00001 251 SMART ring_2 203 240 IPR001841 -
Stsc90666g00001 251 MobiDBLite consensus disorder prediction 73 120 - -
Stsc90666g00001 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 250 IPR013083 -
Stsc90666g00001 251 PANTHER OS01G0917900 PROTEIN 5 251 - -
Stsc90666g00001 251 MobiDBLite consensus disorder prediction 77 97 - -
Stsc90666g00001 251 Pfam Zinc finger, C3HC4 type (RING finger) 202 245 - -
Stsc90666g00001 251 SUPERFAMILY RING/U-box 199 248 - -
Stsc90666g00001 251 ProSiteProfiles Zinc finger RING-type profile. 203 241 IPR001841 -
Stsc90666g00001 251 MobiDBLite consensus disorder prediction 133 153 - -
Stsc90666g00001 251 CDD RING-HC 203 240 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc90666g00001 Stsc-Chr90666 3617 4372 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90666g00001 29 251 C3H Transcription Factor Family AT4G22250 48.879 5.51e-57 179
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90666g00001 - - pcin:129286609 258.84