Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90665g00017 ATGGAGAATGATTTCTACAGTGCTTCACTGAACATGGAGCATAATCCTACACCAAAGCCACTCCTTCACTGCTATTCATTTGATCTTAATAACCAAAACAACATCATAAATGGAATCCCAATGCTTGATGTAGATCAAGGAGGTGTTAATGGTAGTAGCTTCATAAATTCTTCAAGTATTCTTAATTCCAATTCATTTGTTACTTCATCACAAGGAAAGACTATTGTAGGAGATGCCTCGAACGGCGAGTTTCGCGAGCATTTAGCCGATGGAACGCCGAGCAGCACGCCGGCTTCTCCGCTCGCAGCAATTCTTGCTGCTAGAATTGGCCTGCAAGAAAATCTAGAGAATTCAGCAACATTGTTGCCTTCATTTGAGGCACTAGGCCAATATGTCTTAAATAATTGGCATGATACTTCGAATTCAAACACCTTTCCAGCGACTCTCTACGGCGGCGATCGTGGCTATGATGAAGTCCCTGGCAATGGTAAGTGGAACTTTAACAAGTTTCCAAAAGCACTAGAAGTTGAAGGAAGTGGATTGGTACCTTATTCATCCATAGGGAATCTTGATCCTAATGGATGGTCATCAATGAATGCTGCAAATTTGGCTAATCATGCTTACAATTCGTCGATTTATAGCAACGAGCTATCGTTAAGTCTTGCAACGTCGCCGGCCTCAGGTCAGTGCTCGGAGATGAGCTGCTCGGATGTGAGCTGCAGCATGAATGAAACAAGGACAGCATTGGAGAAAGGTTCTTGCGGCAGTAGGGAACTATGTATGACTTTAGGCTCCGAAAAATATGTTCGGTTTTCGCCGGTGATACTTGGATCAAAGTACCTTGTAGGAATTCAAGAGGTACTCGCTCAAATCGCAGCATATTCGCTTGAGAATCTAGAAGAGGTGAATTATGTAAGTGCTGGTGATAGAGCTGGAGGAAATAAATCAACATCAGGTTTCGTGCCAAAGGGGATGGCAGCAACAAATTCGAATCCAAATTCTTCTATGTTTGAAGCTCATGCAGAATCTCCATTGCAAAGACATGCAGCTGAATCAAACAAATCCCAGTTGCTAACACTTTTACAGCTGGTGGACAACCGATATAGTCAGTGTTTGGATGAGATACACACAGTTGTATCAGCTTTCCACGCCGCCACTGAGCTTGATCCGCGCATACACGCACACTTTGCGCTCCGAACAGTATCTCTACTATACAAGGACTTGAGAGAGAGGATCAGCAATCACATTCTTGCTACCGGGTCCAATATCGGCGACTCGTGCTCGGAAGATAAGGAATGGTCTGTTGATACTTCCTTCATTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCAGCTCTGGAGACCCCAAAGGGGCTTGCCCGAAAAATCTGTCTCGGTTCTTCGTGCTTGGATGTTCCAGAACTTTCTCCATCCGTATCCTAGAGATGCAGAGAAACATTTACTTGCAGTAAAAAGTGGGTTAACAAGAAGTCAGGTGTCTAACTGGTTCATAAATGCTCGGGTTCGGTTATGGAAACCTATGATCGAAGAAATGTATGCTGAAATGAATCGAAGGAAGGCTTGTCGAATCGAAGAAGGGATGGAGGGAGGCCATAGAAGCAGGCTAAGCATGAACAATCACTACTTTAATATGAATTGA 1668 0.4376 MENDFYSASLNMEHNPTPKPLLHCYSFDLNNQNNIINGIPMLDVDQGGVNGSSFINSSSILNSNSFVTSSQGKTIVGDASNGEFREHLADGTPSSTPASPLAAILAARIGLQENLENSATLLPSFEALGQYVLNNWHDTSNSNTFPATLYGGDRGYDEVPGNGKWNFNKFPKALEVEGSGLVPYSSIGNLDPNGWSSMNAANLANHAYNSSIYSNELSLSLATSPASGQCSEMSCSDVSCSMNETRTALEKGSCGSRELCMTLGSEKYVRFSPVILGSKYLVGIQEVLAQIAAYSLENLEEVNYVSAGDRAGGNKSTSGFVPKGMAATNSNPNSSMFEAHAESPLQRHAAESNKSQLLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDPRIHAHFALRTVSLLYKDLRERISNHILATGSNIGDSCSEDKEWSVDTSFIQKQWALQQLKRKDQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPRDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRKACRIEEGMEGGHRSRLSMNNHYFNMN 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90665g00017 555 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 205 530 - -
Stsc90665g00017 555 SMART HOX_1 456 520 IPR001356 GO:0003677
Stsc90665g00017 555 Pfam Associated with HOX 274 413 IPR006563 -
Stsc90665g00017 555 Gene3D - 459 537 - -
Stsc90665g00017 555 CDD homeodomain 456 517 IPR001356 GO:0003677
Stsc90665g00017 555 Pfam Homeobox KN domain 473 512 IPR008422 GO:0003677|GO:0006355
Stsc90665g00017 555 SUPERFAMILY Homeodomain-like 457 525 IPR009057 -
Stsc90665g00017 555 ProSiteProfiles 'Homeobox' domain profile. 453 516 IPR001356 GO:0003677
Stsc90665g00017 555 SMART prehox3 269 414 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90665g00017 Stsc-Chr90665 151607 153940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90665g00017 215 529 Homeobox Transcription Factor Family AT4G32980 56.426 3.78e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc90665g00017 POX 1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90665g00017 - - aip:107605517 882.478