Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90665g00008 ATGGACGGGTTTTATGATGTTTATGGCATCACCTCAAATTTGACTGAACGGGGAAAGATGCCGTTGTTGGTGGATCTGCAATCTACACCCGTCTCAAGAAATATTGATTGTGAAGTGATTGTGGTGAATCGCACAGTTGACACTCAGCTAAAGCAGCTTGAAGAAAAAGCCTGTGCTTTACTTAATGAGTGTTGTGTTTCTGAACTAGGACTAATCTTGAGTGGCTTACTCCAGAAACTTGCTGATATTGTTGTCAATAAAATGGGTGGACCAGTTGGTAGTGCTGATAAAATCACAAAAAGCTGGGCTGTGAGGAGTCGCGAGCTTCGAGATTCCTTAAGATCTATTGTTCTTCCCCTTGGCAGTCTTGATGTTGGACTTTCACGTCACCGAGCCCTACTTTTCAAGGTACTAGCTGATAGGATTAATATTCCCTGCATGCTGGTCAAAGGGAGCTATTACACAGGAACAGATGATGGAGCAGTGAACTTAATTAAAGCTGATGATGGAAGTGAATACATTATTGATATGATGGGTGCTCCTGGGGCTCTTATTCCTGCTGAGGTACCTAGTAATCAGCTCCAAAACTACAGCTTTGCTGTCAGGGGTTATGCAGAGATTGTAGGGTTACCTAATGGGACACATCCACTGCTTGATGATGGAACTGGAGTGCTGGGAATCCCATCTGATATCAGCAAAATCTCAACGCTGGGGAGGGTCCAGCCAGAAGAACTACTATTAGATATGGGCAGTCAAACAAAACCAGATAAAATACATAACGTTGAAGAAAACGACACTGAAGCGTACAAATGCTCTTCACCTACAGAACCATCTCCTGCGGAAAAGATCCGTGTAAATAATGTCTCCAAGTATGTTCTCAGTGCAGCAAAGAACCCGGAATTTGCTCAAAAGTTGCACACAGTTCTATTAGAGAGTGGTGCATTACCTCCTTCTGATCTTTTTTCAGATATGAATCTTCAGGATATGGGTGAGCATAGAGTAAATGAAAAAAATGATGTTGGTGTTGTTCAAGCAGATCCAAGTGGGTTGTTATTAAGCTATGAGAATTGTCTCACTCCCTCTCAAGGGCTAGGCTATGCCAATAATACTAGGAAATGTAAATCAGCTGACCGAATAGTTGGACAGCAAAAAGAATTGCATACAGATGCCATTAGATTTTGTAACTCTTTACAGGGTGATAACAGAAGGAGGGGGCTTGTAACCACTTCTGACAGGATTAATGGTTTAGAGCTATCTAATTCATTAATTGATTCAGTTGCTGTCAATCGCCATAAGATGTGTAAAGAAAATTTTGTTGAATCTTCTGAGCCCAAAGCCGCTGTCAATGGGTTTGAGGACTTTGGTGACGATGAAGAAAATAGTTTTCCAAATAAGGTTGAAGCATCTTGTAACAACATTGTACGGGGGACAGATTCATCTCAAATAAATGAGATGGTCAATGGAGGTGGTATCCGACATGATAGCAATCAAGTTAATTCTGTACTTGGTGAGGGAACAGAATGGGAAATTCAATGGGAGGATCTTTCTGTTGGTGAGCGCATTGGTATTGGTTCTTATGGTGAAGTATACCGTGCTGATTGTAATGGAACTGAAGTCGCGGTGAAGAAGTTTCTTGACCAAGATTTCTCTGGGGATGCACTAGCTCAGTTCAAATCTGAAGTTGAGATCATGCTAAGGCTGCGGCACCCTAATGTTGTACTCTTCATGGGAGCAATTACTCGCTCTCCACATTTCTCAATCTTAACAGAGTTTCTCCCCAGAGGCAGCTTATACAGACTATTACATCGGCCCAACGTTCGAATTGATGAGAAGAGACGGTTGCGTATGGCTCTTGATGTGGCTAAAGGAATGAGTTACTTGCATACAAGCAATCCTCCCATTGTCCATCGAGATTTAAAGTCTCCAAATCTTCTTGTTGACAAGCATTGGGTTGTTAAGGTTTGTGATTTTGGTCTGTCACGGATGAAGCACCATACTTTTTTGTCATCAAAGTCCTGTGCAGGAACGCCTGAGTGGATGGCTCCAGAAGTTCTAAGAAACGAACCAGCCAATGAGAAGTGTGATGTGTATAGTTTTGGTGTAATCTTGTGGGAGCTGGCTACCATGATGATTCCCTGGAAAGGTTTGAACCCAATGCAGGTTGTCGGAGCTGTTGGATTTCAAAATAAACGGCTTGAAATTCCAGACAATGTCAATCCTGCAGTCGCGCAAATCATACGTGATTGCTGGCAAATGGAGCCACATTTGCGGCCATCATTTGCCCAGCTGATGTCTCGTCTCTCCCGTCTTCAACATCTGGTTGCCGGAATAGCGAGCTCCACACAGTAA 2349 0.4283 MDGFYDVYGITSNLTERGKMPLLVDLQSTPVSRNIDCEVIVVNRTVDTQLKQLEEKACALLNECCVSELGLILSGLLQKLADIVVNKMGGPVGSADKITKSWAVRSRELRDSLRSIVLPLGSLDVGLSRHRALLFKVLADRINIPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDMMGAPGALIPAEVPSNQLQNYSFAVRGYAEIVGLPNGTHPLLDDGTGVLGIPSDISKISTLGRVQPEELLLDMGSQTKPDKIHNVEENDTEAYKCSSPTEPSPAEKIRVNNVSKYVLSAAKNPEFAQKLHTVLLESGALPPSDLFSDMNLQDMGEHRVNEKNDVGVVQADPSGLLLSYENCLTPSQGLGYANNTRKCKSADRIVGQQKELHTDAIRFCNSLQGDNRRRGLVTTSDRINGLELSNSLIDSVAVNRHKMCKENFVESSEPKAAVNGFEDFGDDEENSFPNKVEASCNNIVRGTDSSQINEMVNGGGIRHDSNQVNSVLGEGTEWEIQWEDLSVGERIGIGSYGEVYRADCNGTEVAVKKFLDQDFSGDALAQFKSEVEIMLRLRHPNVVLFMGAITRSPHFSILTEFLPRGSLYRLLHRPNVRIDEKRRLRMALDVAKGMSYLHTSNPPIVHRDLKSPNLLVDKHWVVKVCDFGLSRMKHHTFLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELATMMIPWKGLNPMQVVGAVGFQNKRLEIPDNVNPAVAQIIRDCWQMEPHLRPSFAQLMSRLSRLQHLVAGIASSTQ 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90665g00008 782 Gene3D Transferase(Phosphotransferase) domain 1 594 776 - -
Stsc90665g00008 782 FunFam Serine/threonine-protein kinase CTR1 594 776 - -
Stsc90665g00008 782 FunFam Serine/threonine-protein kinase isoform 1 506 593 - -
Stsc90665g00008 782 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524
Stsc90665g00008 782 PRINTS Tyrosine kinase catalytic domain signature 738 760 IPR001245 GO:0004672|GO:0006468
Stsc90665g00008 782 PRINTS Tyrosine kinase catalytic domain signature 694 716 IPR001245 GO:0004672|GO:0006468
Stsc90665g00008 782 PRINTS Tyrosine kinase catalytic domain signature 675 685 IPR001245 GO:0004672|GO:0006468
Stsc90665g00008 782 PRINTS Tyrosine kinase catalytic domain signature 628 646 IPR001245 GO:0004672|GO:0006468
Stsc90665g00008 782 PRINTS Tyrosine kinase catalytic domain signature 589 602 IPR001245 GO:0004672|GO:0006468
Stsc90665g00008 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Stsc90665g00008 782 SMART serkin_6 515 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90665g00008 782 Pfam Ethylene-responsive protein kinase Le-CTR1 1 185 - -
Stsc90665g00008 782 ProSiteProfiles Protein kinase domain profile. 515 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90665g00008 782 Gene3D Phosphorylase Kinase; domain 1 508 592 - -
Stsc90665g00008 782 Pfam Protein tyrosine and serine/threonine kinase 516 767 IPR001245 GO:0004672|GO:0006468
Stsc90665g00008 782 SUPERFAMILY Protein kinase-like (PK-like) 500 766 IPR011009 -
Stsc90665g00008 782 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 289 771 - -
Stsc90665g00008 782 CDD STKc_MAP3K-like 521 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90665g00008 Stsc-Chr90665 70986 77747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90665g00008 493 773 MAP Kinase Kinase Kinase AT5G11850 83.630 9.19e-171 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc90665g00008 PK_Tyr_Ser-Thr 4.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90665g00008 K04424 - gmx:100779790 1134.78