Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90665g00005 ATGGTGTCGACGACGACGGTGATAATGATAGCACTAGTCTTCTTAATAGGAATAGCCGCATCAAATGATAGTCAAACTCAAGCCCTCAAAGGTTGTCGAAGTTCTTGTGGAGATATTCAAATTCCATATCCATTTGGGGTTGGAAATTCAGTAAACACCGGTAAGAATTGCTCTTTATCACGAAAATTTAACCTAGTCTGTAAAAACTCGAACTTATATCGAGGTTCAATCCCGATCATAGCCATAAACATCACCAAAGGTCAAGTTGACATGGTGATTCCAATCTCCAAAACTTGTTATGTCAAAAATTATGGTCACACCATAACCGTTGGTAATGAACCATGGTTAAGAAGTACTTATACGATTTCTAGCGCGGATAACAAGTTCATAAGTGTTGGTTGTGACACTTACGGCTACCTTAATAGTTTCTTCGATGGCGCGACGTATTCAACCGGGTGTTTAACGAGATGTTATCGTGAATCGACGATGATCACTGACGGGAAATGCTCGGGGATTGGGTGTTGTCAAGTGGATATTCCGGCCGGGATGAGGAACAACACGGTGCAAGCATTTAGCTTTGAGAATTTCAATAGGTCATTGGGCTTCAACAATTGTAGCTATGCCTTTGTTGCCAAAAATGGTAATTATACATTTTCTAGGGATCATTTGGAAAATTTACCTTATGAGAGGATGGCTGTGGTTTTTGATTGGAGTGTTGGAAATGAGACATGTGAAGATTCTTTCAAATCCAAAACAAATGTTTGTAAAGGTAATAGCAATTGTGAGAAATCAGAGACTGGAAATGGTTATCTATGCAAATGCAAGGAAGGTTATGAAGGAAATCCATATCATCCAATTGGGTGCATAGACATGGACGAATGCAAGATAGGAAAGCATGATTGCATAAGTGAAGGTAATTGTATAAATACAATTGGGTCCTACAAATGTTTTTGTCCAAAGGGTCAAACTGGAAATGGGACAAAGGAACAAGGTCCCTGCCGCCACCAAAATTTACTTCCCAAGGTTGTTATTGGTACAAGTGCAGGATCCATTGCTCTTGTTGTGGCAACTTCATTGTTTATCTTAACACATCATAAAAGAAAGCACATTCAACTCAAAGAAAAATTCTTTAAGCAAAATGGTGGCTTAATGTTGTTACAACAACTCTCTTCAAGAGAAGAATCTTCATCAGTTACTCAAATTTTCACATCACAGGAACTAAGGAAGGCTACCAACAATTATGATGAGAACTTAATACTAGGAAGAGGAGGTTATGGTACAGTTTTCAAAGGTTATCTCGACGATAATAGAGTAGTCGCAGTCAAGAAATCTAGAATAGTTGATCAGAGCCAAACAGAACAATTCATCAATGAGGTGATTGTTCTATCCCAGATCAATCACAGGAATATAGTGAAACTGTTAGGTTGTTGCTTGGAAGAAGAGGTTCCTTTGTTAGTTTACGAATTTGTTAACAATGGAACCCTCTTTGATTTTATCCACAATCAAAACAATGCAAAGAACTTGTTAACTTGGAAAACTCGTCTAAGGATAGCAGCAGAGGCAGCCAGTGCTCTATCATATCTACACTCAGCGGCCTCTATACCCATTATCCACCGAGATGTGAAGAGTGCAAATATTCTCTTAGATGATACTTTAACCGCCAAAGTTTCCGATTTCGGAGCTTCAAGATTGGTACCTCTAGATCAAGAAGCATTAGCCACCATGGTGCAAGGAACAATTGGATACTTGGATCCGGAATACATGCAAACGAGTCAACTAACTGAGAAAAGTGACGTATATAGTTTTGGAGTAGTGCTCGTAGAGCTTCTAACAAGCGAAAAACCTCTTTCTTTTGATAGGACAGAAGAAAAGCGAAGTCTCGCTCTTTACTTTCTATCCTATTTAAAAGAGGATCGCTTATTGGAAATTCTTCAAGTTGATCTTTTGAGTGAAGAAAATATGCAAGAGATTGAAGAGGTTGCTATTCTTGCAGCTAAGTGTTTGAGACTTAATGGGGATGAGAGACCAAGTATGAAGGAAGTGGCAATGGAATTGGAGGGATTACGATTAATGCAGAGACACCCTTGGATCAATGAGAACAAAAATTTGGAAGAGACTCATTACTTGCTTTCCAAGTCATCATCCAAAACATATGAATTGGGTGATAGTAGTTGCCATAGAAATGATGGGTATGATACCTTCAGTGATCAAGTATTAATTTCTTTTGATGATGGAAGATGA 2241 0.3855 MVSTTTVIMIALVFLIGIAASNDSQTQALKGCRSSCGDIQIPYPFGVGNSVNTGKNCSLSRKFNLVCKNSNLYRGSIPIIAINITKGQVDMVIPISKTCYVKNYGHTITVGNEPWLRSTYTISSADNKFISVGCDTYGYLNSFFDGATYSTGCLTRCYRESTMITDGKCSGIGCCQVDIPAGMRNNTVQAFSFENFNRSLGFNNCSYAFVAKNGNYTFSRDHLENLPYERMAVVFDWSVGNETCEDSFKSKTNVCKGNSNCEKSETGNGYLCKCKEGYEGNPYHPIGCIDMDECKIGKHDCISEGNCINTIGSYKCFCPKGQTGNGTKEQGPCRHQNLLPKVVIGTSAGSIALVVATSLFILTHHKRKHIQLKEKFFKQNGGLMLLQQLSSREESSSVTQIFTSQELRKATNNYDENLILGRGGYGTVFKGYLDDNRVVAVKKSRIVDQSQTEQFINEVIVLSQINHRNIVKLLGCCLEEEVPLLVYEFVNNGTLFDFIHNQNNAKNLLTWKTRLRIAAEAASALSYLHSAASIPIIHRDVKSANILLDDTLTAKVSDFGASRLVPLDQEALATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTSEKPLSFDRTEEKRSLALYFLSYLKEDRLLEILQVDLLSEENMQEIEEVAILAAKCLRLNGDERPSMKEVAMELEGLRLMQRHPWINENKNLEETHYLLSKSSSKTYELGDSSCHRNDGYDTFSDQVLISFDDGR 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90665g00005 746 FunFam Wall-associated receptor kinase 2 384 489 - -
Stsc90665g00005 746 CDD EGF_CA 290 324 - -
Stsc90665g00005 746 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 307 318 IPR000152 -
Stsc90665g00005 746 SUPERFAMILY EGF/Laminin 290 325 - -
Stsc90665g00005 746 Gene3D Laminin 242 333 - -
Stsc90665g00005 746 Gene3D Phosphorylase Kinase; domain 1 386 489 - -
Stsc90665g00005 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Stsc90665g00005 746 SMART serkin_6 414 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90665g00005 746 ProSitePatterns Protein kinases ATP-binding region signature. 420 443 IPR017441 GO:0005524
Stsc90665g00005 746 Pfam Protein kinase domain 416 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90665g00005 746 ProSiteProfiles EGF-like domain profile. 290 328 IPR000742 -
Stsc90665g00005 746 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 698 IPR045274 GO:0007166
Stsc90665g00005 746 CDD STKc_IRAK 420 688 - -
Stsc90665g00005 746 Pfam Calcium-binding EGF domain 290 327 IPR001881 GO:0005509
Stsc90665g00005 746 Pfam Wall-associated receptor kinase galacturonan-binding 32 83 IPR025287 GO:0030247
Stsc90665g00005 746 ProSitePatterns Calcium-binding EGF-like domain signature. 290 316 IPR018097 GO:0005509
Stsc90665g00005 746 Gene3D Transferase(Phosphotransferase) domain 1 490 711 - -
Stsc90665g00005 746 ProSiteProfiles Protein kinase domain profile. 414 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90665g00005 746 FunFam Wall-associated receptor kinase 2 490 708 - -
Stsc90665g00005 746 SUPERFAMILY Protein kinase-like (PK-like) 392 685 IPR011009 -
Stsc90665g00005 746 SMART egf_5 243 289 IPR000742 -
Stsc90665g00005 746 SMART egf_5 293 334 IPR000742 -
Stsc90665g00005 746 SMART egfca_6 290 334 IPR001881 GO:0005509
Stsc90665g00005 746 FunFam Fibrillin 2 285 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90665g00005 Stsc-Chr90665 35588 39034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90665g00005 6 746 Receptor kinase-like Gene Family AT1G21230 44.960 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc90665g00005 Pkinase 4.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90665g00005 - - gmx:100819535 912.524