Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90663g00029 ATGGGTCGCAAAGTCGCAGCCGAACCAGTTGCCGTGCCACCACCAGCAGAAGAAGCCCCAAAGAGCCCCGAACTCAAATCCGAGAAGAAGAAGAAGAAAAAGCACAAGAACAAAGACAAACACAACCAAGAAGAAAACGGAACCGCTACTCCCAAAAGAAAGCTAGACGAGATCCAGCCTCAAAATGACGGTGAATCGGACAAGAAGAAAAAGAAGAAGAATAAGCACAAACGCGATTCCGGAGACAACGTGGAGGAGGAAGTCAAAGCTGAATGCGTTGATGGAGGTGGAGGTGGCGGCGGTGGAGATGAGTCGGTTACCGACGGGCACGTGGTGGTTACAGGGAAGAATGCTGGAGAGGCGAAGTACGCGCCGGTGAAGAGCTTCGCCGGTTCGGGGCTGCCGGAAAACGTTCTGGAGTGCTGCAAGGGTTTCGAGAAGCCTTCGCCGATTCAGTCACGGGCATGGCCTTTCTTAATGGACGGTCGTGATCTGATCGGAATCGCTGCAACTGGTTCAGGGAAGACACTGGCGTTTGGGATTCCTGCCGTTATGCATGTTCTGAGTAAGCGGAAGAATAAAGCGGTGAAGGGTCGGAACCCTCTTTGTCTCATGCTCTCTCCTACCAGGGAGCTAGCTCAACAAATTTCAGATGTTATGTGTGATGCAGGTAGATCTTGTGGTGTAGAGTCAGTTTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCGCGTCACTGAAATCTGGCGTTGACATTGTCATTGGAACTCCTGGTCGTATACAGGATCTGATAGAAATGGGTGTGTGTAGCCTAAAAGAAGTATCTTTTGTGGTGCTCGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAGTAGTCCGTTCTATACTGGGTCAGACATGCTCTGTTCGTCAAATGGTGATGTTTAGCGCTACGTGGCCCTTACCGGTTCATCAGTTAGCACAGGAGTTCATGGATCCCAACCCCATAAAAGTTGTTGTAGGTTCAGAAGATTTAGCTGCAAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGATCGTGCACGTGATAAGCGACTAATTGCATTACTGGAAAAATACCACAAATCTCAGAGGAATCGAGTATTGGTCTTTGTTTTGTACAAAATGGAAGCCACACGAGTTGAAAGGATGCTTCAACAAGGTGGTTGGAAGGTTGTGTCAATACATGGAGACAAAGCACAACATGATCGTACAAAGTCACTTTCATTATTCAAGAACGGGAGCTGTCCTTTAATGATTGCTACTGATGTGGCTGCACGAGGATTAGACATTCCAGATGTTGAAGTTGTTATCAACTATAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGTCGGACTGGACGAGCTGAAATGTTTCAGGGTCTTGCTGGGGAGCTTGTGAATGTATTAAGAGAAGCTGGGCAAGTTGTGCCAGATGCCCTTTTGAAATTTGGCACACATGTAAAGAAAAAGGAATCCAAGCTTTATGGAGCTCACTTTAAGGAAATTTCCGCTGATGCACCAAAGTCTCAAAAAATTACATTTGACAACTCTGACGATGAAGAATAA 1608 0.4633 MGRKVAAEPVAVPPPAEEAPKSPELKSEKKKKKKHKNKDKHNQEENGTATPKRKLDEIQPQNDGESDKKKKKKNKHKRDSGDNVEEEVKAECVDGGGGGGGGDESVTDGHVVVTGKNAGEAKYAPVKSFAGSGLPENVLECCKGFEKPSPIQSRAWPFLMDGRDLIGIAATGSGKTLAFGIPAVMHVLSKRKNKAVKGRNPLCLMLSPTRELAQQISDVMCDAGRSCGVESVCLYGGTSKGPQIASLKSGVDIVIGTPGRIQDLIEMGVCSLKEVSFVVLDEADRMLDMGFEQVVRSILGQTCSVRQMVMFSATWPLPVHQLAQEFMDPNPIKVVVGSEDLAANHDVMQIVEVLDDRARDKRLIALLEKYHKSQRNRVLVFVLYKMEATRVERMLQQGGWKVVSIHGDKAQHDRTKSLSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAEMFQGLAGELVNVLREAGQVVPDALLKFGTHVKKKESKLYGAHFKEISADAPKSQKITFDNSDDEE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90663g00029 535 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 279 287 IPR000629 -
Stsc90663g00029 535 MobiDBLite consensus disorder prediction 39 69 - -
Stsc90663g00029 535 MobiDBLite consensus disorder prediction 1 108 - -
Stsc90663g00029 535 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 127 153 IPR014014 GO:0003724
Stsc90663g00029 535 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 59 494 - -
Stsc90663g00029 535 MobiDBLite consensus disorder prediction 78 92 - -
Stsc90663g00029 535 CDD DEADc 143 334 - -
Stsc90663g00029 535 Gene3D - 338 501 IPR027417 -
Stsc90663g00029 535 Pfam DEAD/DEAH box helicase 150 319 IPR011545 GO:0003676|GO:0005524
Stsc90663g00029 535 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 333 IPR014001 -
Stsc90663g00029 535 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 509 IPR001650 -
Stsc90663g00029 535 Gene3D - 103 337 IPR027417 -
Stsc90663g00029 535 SMART ultradead3 144 350 IPR014001 -
Stsc90663g00029 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 475 IPR027417 -
Stsc90663g00029 535 SMART helicmild6 389 470 IPR001650 -
Stsc90663g00029 535 CDD SF2_C_DEAD 347 469 - -
Stsc90663g00029 535 Pfam Helicase conserved C-terminal domain 361 469 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90663g00029 Stsc-Chr90663 170823 175569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90663g00029 125 468 Eukaryotic Initiation Factors Gene Family AT3G19760 32.948 1.21e-51 179