Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90663g00026 ATGGCAGCTTGCACTGTCTACTCCACACAATGTTTCAACACAATCTCATCAACTCCATCATCAAAAACACACTTAGCATTCCACCAAAGACAAGTAGTGTTCTACACAACAACAACCAGTAACAAGAGAAACAACAGCAAGAGAAGTGGTGGCAGTGTGATAACATGTGCTGCCGGAGACACGGTGGTGATTGGTCTTGCTGCAGACTCAGGCTGCGGCAAGAGTACCTTCATGAGGAGGCTGACAAGTGTGTTCGGGGGCGCGGCGGAGCCGCCCAAAGGCGGAAACCCGGACTCGAACACACTGATCAGTGACACAACGACTGTGATATGCTTGGATGATTACCATTCATTGGATAGAACTGGGAGAAAAGAGAAGGGTGTGACTGCTCTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAACAAGTTAAGGCTCTTAAGGATGGAATTGCTGTTGAGAAACCTATCTACAACCATGTCACTGGTCTCTTGGATCCACCTGAACTCATCAAGCCTCCCAAAATCTTGGTCATTGAAGGTTTGCACCCAATGTTTGATGCTCGGGTCAGAGATCTGTTGGACTTCAGCATCTACTTAGACATCAGCAATGAGGTCAAATTCGCATGGAAAATTCAGAGAGACATGGCAGAGCGTGGACACAGTCTTGAAAGCATCAAGGCTAGCATTGAAGCAAGGAAGCCTGATTTTGATGCTTATATTGATCCTCAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACTCAGCTGATCCCAGATGACAATGAAGGCAAGATTCTAAGAGTGAGGCTCATTCAGAAAGAAGGAGTCAAGCACTTTAGCCCTGTTTACTTGTTTGATGATGGCTCCACCATTTCTTGGATCCCATGTGGAAGGAAGCTTACATGCTCTTACCCTGGCATCAAATTCTTCTATGGTCCTGATTCTTACTTTGGAAATGAGGTTTCGGTTGTAGAAATGGATGGTCAATTTGACAGACTAGATGAACTAATATATGTAGAGAGCCATCTAAGCAACCTGTCCTCAAAATTCTATGGAGAAGTGACTCAACAGATGTTGAAGCATGCTGACTTCCCTGGAAGCAACAATGGTACTGGTCTCTTCCAAACCATTGTTGGTCTCAAGATTAGAGAGTTGTATGAACAGATTGTAGCCTCCAAGACTGAGGCTCCTGTAGGAGCAGCTAAGGCTTAA 1224 0.4493 MAACTVYSTQCFNTISSTPSSKTHLAFHQRQVVFYTTTTSNKRNNSKRSGGSVITCAAGDTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDARVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKHFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFFYGPDSYFGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRELYEQIVASKTEAPVGAAKA 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90663g00026 407 PANTHER URIDINE KINASE 49 292 - -
Stsc90663g00026 407 FunFam Phosphoribulokinase 58 288 - -
Stsc90663g00026 407 Pfam Phosphoribulokinase / Uridine kinase family 63 261 IPR006083 GO:0005524|GO:0016301
Stsc90663g00026 407 CDD PRK 63 351 - -
Stsc90663g00026 407 Gene3D - 59 292 IPR027417 -
Stsc90663g00026 407 PRINTS Phosphoribulokinase family signature 177 195 IPR006082 GO:0005524|GO:0005975|GO:0008974
Stsc90663g00026 407 PRINTS Phosphoribulokinase family signature 212 229 IPR006082 GO:0005524|GO:0005975|GO:0008974
Stsc90663g00026 407 PRINTS Phosphoribulokinase family signature 230 253 IPR006082 GO:0005524|GO:0005975|GO:0008974
Stsc90663g00026 407 PRINTS Phosphoribulokinase family signature 68 85 IPR006082 GO:0005524|GO:0005975|GO:0008974
Stsc90663g00026 407 ProSitePatterns Phosphoribulokinase signature. 212 225 IPR006082 GO:0005524|GO:0005975|GO:0008974
Stsc90663g00026 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 332 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90663g00026 Stsc-Chr90663 155193 157327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90663g00026 115 289 PRT Gene Family AT3G27440 26.966 6.73e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90663g00026 K00855 - gmx:100777515 720.694