Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90663g00024 ATGGCTGCAAACGTGAACTGTGACATGCCACATAACAGAATAAGCACCACTCTCATCACGTACCCTCATTGGTATTCACCAAAAAATGGAATTTACCGAAGCAAACACCCCGCTTTGGACCTTCCCAAAGACCCTTTTTTTGACCTTGTTTCCTTCGTCTTTTCCCACCGCCATAATGGGGTTTCAGCCCTTGTTGATTCCTCAACTGGCTCTTCCATTTCTTACCCAAAGTTGCAACCTTTGGTCAAATCCATGGCCTATGGTCTTCACAAAATGGGTGTCTCACAAGGAGACGTGGTTCTGCTTTTGCTTCCAAATTCCATTTACTATCCCATTGTGTTCATGGCTGTTCTCTGTTTAGGTGCTGTTGTTGCACCATTGAACCCTCTAAAAAATGAGGAGGGTTTGAAGCTTGATTGTTTCTCTTGTTTTAGTAACATGATTTCTGGTGAATTTGGTTTCTATATGAGGCCAGTGATTCAGCAGGAGGACACTGCTGCTATATTGTATTCTTCAGGGACAACTGGGGTGAGCAAAGGAGTTGTTCTAACACATAAGAACCTTATTTCTATGGTTGAGCTTTTTGTGAGGTTTGAAGCTTCTCAATATGAATACTCTTGCTTGAACAATGTTTTTCTAGCTGTTCTTCCAATGTTCCATGTGTATGGTCTATCGCTTTTCGCTTTGGGGTTACTGTCTTTGGGTTCTACTGTCATTGTAATGAGGAAATTTGACATTGATGAGGTTATCAATGCAATTGACAAGTTTAAGGTTACACATTTCCCCGTTGTTCCGCCGATGTTGACAGCATTGACAAAGAGAGCAAAGGGTGTTAATGGAAGTAATTTGCAGAGTTTGATACAAGTCTCAAGTGGTGCAGCACCTTTGAATGAAAGTGTTATTGAAGACTTTGTGCAAACATTCCCTGATGTTGATTTTATACAGGGTTATGGAATGACCGAATCGACTGCAGTAGGAACACGCGGCTTCAATACTGAGAAATTGCACAATTATTCGTCAGTAGGATTGTTAGCTCCAAACATGGAGGCAAGAGTCGTAGACTGGAGTAGCGACGCATTCTTGCCTCCGGGAAGCAGTGGTGAGCTTTGGTTGAGAGGACCTGCAATCATGAAAGGGTACTTGAATAATGAGGAAGCAACAATGTCAACAATTGATAAAGATGGTTGGCTGCATACTGGTGATGTTGTTTATTTTGATGAAGATGGGTATTTGCATATATCAGACCGCTTGAAAGATATAATCAAATACAAGGGCTTTCAGATTGCTCCTGCTGATTTAGAAGCTGTGTTAATGTTACATCCGGAAGTTGTTGATGTTGCAGTTACAGCTGCCATGGACGAAGCAGCCGGGGAGATCCCCGTTGCATTTGTGGTCAGGAAGGTTGGAAGCATGATTTCTGCAAAGCAAATAATGGATTATGTTGCTGAGCAGGTTGCTCCATACAAGAAGGTTAGGAAAGTGATCTTCATTGAAAGGATACCAAGATCTCCAACTGGGAAGATCCTTAGGAGGCAGCTTAGGAATTACTTCACCTCTAAACTCTAA 1566 0.4208 MAANVNCDMPHNRISTTLITYPHWYSPKNGIYRSKHPALDLPKDPFFDLVSFVFSHRHNGVSALVDSSTGSSISYPKLQPLVKSMAYGLHKMGVSQGDVVLLLLPNSIYYPIVFMAVLCLGAVVAPLNPLKNEEGLKLDCFSCFSNMISGEFGFYMRPVIQQEDTAAILYSSGTTGVSKGVVLTHKNLISMVELFVRFEASQYEYSCLNNVFLAVLPMFHVYGLSLFALGLLSLGSTVIVMRKFDIDEVINAIDKFKVTHFPVVPPMLTALTKRAKGVNGSNLQSLIQVSSGAAPLNESVIEDFVQTFPDVDFIQGYGMTESTAVGTRGFNTEKLHNYSSVGLLAPNMEARVVDWSSDAFLPPGSSGELWLRGPAIMKGYLNNEEATMSTIDKDGWLHTGDVVYFDEDGYLHISDRLKDIIKYKGFQIAPADLEAVLMLHPEVVDVAVTAAMDEAAGEIPVAFVVRKVGSMISAKQIMDYVAEQVAPYKKVRKVIFIERIPRSPTGKILRRQLRNYFTSKL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90663g00024 521 CDD 4CL 41 513 - -
Stsc90663g00024 521 SUPERFAMILY Acetyl-CoA synthetase-like 57 518 - -
Stsc90663g00024 521 Pfam AMP-binding enzyme 159 423 IPR000873 -
Stsc90663g00024 521 Pfam AMP-binding enzyme 57 136 IPR000873 -
Stsc90663g00024 521 Gene3D - 419 519 IPR045851 -
Stsc90663g00024 521 FunFam 4-coumarate--CoA ligase 2 419 520 - -
Stsc90663g00024 521 ProSitePatterns Putative AMP-binding domain signature. 168 179 IPR020845 -
Stsc90663g00024 521 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 515 - -
Stsc90663g00024 521 FunFam Long-chain-fatty-acid--CoA ligase FadD 137 418 - -
Stsc90663g00024 521 Gene3D - 29 418 IPR042099 -
Stsc90663g00024 521 Pfam AMP-binding enzyme C-terminal domain 433 507 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90663g00024 Stsc-Chr90663 129167 131963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90663g00024 10 521 Monolignol Biosynthesis Gene Families AT4G19010 57.143 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90663g00024 K01904 - gmx:100804808 816.609