Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90663g00008 ATGAGCGTTCCTCCACATCACCCTCCTGCCCCGACAGCAGCGTCGATGACGTGGCAGGCGGCGCCCTTCACGGTGGCCCAGTGGCAGGAGCTTGAGCACCAAGCCCTCATCTTCAAGTACCTCAAAGCAGGACTCACCGTTCCACCCGACCTCCTCGTACCTATTCGGAGGAGCCTCCAGTTGATGTCTCAGAAGCTCTCTCATCACTACCCATCTCTGGGGTTTTATGGGAAGAAGATAGATCCGGAGCCAGGGAGGTGCAGGAGGACCGATGGCAAGAAATGGAGGTGCTCTAGGGAAGCACACCCTGACTCTAAGTACTGCGACCGCCACATGATACGGCGTCGTTACCGTTCAAGAAAGCCTGTGGAATCATCAACTTCATCTCAACAACAATCTCACTCTTCTGCTGCTGTTGCTGCTGCTGCTGCTACTACTACTACTGCTCCTTCTGCTGCTAGTGGTGGTGGTGGTGGTGGTGCTTCTGCTTCTGGTGGAAGNNNNNNNNNNTTGCACACCAATGGAACCCGTGAAGGCTTCACCCTTGGGAGCAGCAATAGTAACAGCTTGCAAAACTTGCACATGGACCACCCTTTGTCACTTCCCGGTGAGGTTAGCAAGAAGGAGTACAGGTTTGCACTGAACTCCGATGTAGACGAGCACAACTTCTTGCAGAAAGATCTGGGAACTGTGAGGTACCAAGGTTATGACTTCACCTCGGATGGCATGTGGTCCATGCCTCATATCCCATCAAACACCGTTTCAGAATCAAGAACCGGTTCTACCATGGTTGGCGACTGCTTCCAACAGCAAACAATTCGCGATGCTGAACTTTTAAACCTCAATGCTGCAGGGTCTAAGGAGATTGTCTTTGGCAGCCAGTTGAGTCCGTCCGGGTGTTTGAAACAGGAATATCAGTCCCCTCAGTCTCTCTTCACTGACTGGCACTGGAAGAAGGATTTAGGCTCTGACGCCGCCATTTATCGGCCCCACAAAGATTTCAACTCAGATGCAAATGTTGATTGCAATGGTTCTTTATAA 1041 0.512 MSVPPHHPPAPTAASMTWQAAPFTVAQWQELEHQALIFKYLKAGLTVPPDLLVPIRRSLQLMSQKLSHHYPSLGFYGKKIDPEPGRCRRTDGKKWRCSREAHPDSKYCDRHMIRRRYRSRKPVESSTSSQQQSHSSAAVAAAAATTTTAPSAASGGGGGGASASGGXXXXLHTNGTREGFTLGSSNSNSLQNLHMDHPLSLPGEVSKKEYRFALNSDVDEHNFLQKDLGTVRYQGYDFTSDGMWSMPHIPSNTVSESRTGSTMVGDCFQQQTIRDAELLNLNAAGSKEIVFGSQLSPSGCLKQEYQSPQSLFTDWHWKKDLGSDAAIYRPHKDFNSDANVDCNGSL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90663g00008 346 MobiDBLite consensus disorder prediction 111 201 - -
Stsc90663g00008 346 ProSiteProfiles WRC domain profile. 81 125 IPR014977 -
Stsc90663g00008 346 ProSiteProfiles QLQ domain profile. 22 57 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc90663g00008 346 PANTHER GROWTH-REGULATING FACTOR 5 16 201 IPR031137 GO:0005634|GO:0006351|GO:0032502
Stsc90663g00008 346 MobiDBLite consensus disorder prediction 177 195 - -
Stsc90663g00008 346 MobiDBLite consensus disorder prediction 123 153 - -
Stsc90663g00008 346 Pfam WRC 82 124 IPR014977 -
Stsc90663g00008 346 SMART QLQ_2 21 57 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc90663g00008 346 Pfam QLQ 22 56 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90663g00008 Stsc-Chr90663 51199 54353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90663g00008 14 164 GRF Transcription Factor Family AT4G37740 48.387 4.76e-39 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Stsc90663g00008 WRC 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90663g00008 - - ahf:112747495 576.63