Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90663g00005 ATGTTTACATGCATAGCTTGTACGAAGCAAACGGCGGAAGAGAGGGAAGAAGAAGGCCGTGAGAGTGGCACGCCCAGTACAAAAGAAGCCGTCAAAAGCCTGACCACGCAGTTAAAGGACATGGCACTGAAGTTTTCAGGTGCATATAAGCAGTGCAAACCATGTACAGGGTCAAGTACCTACAAGAAAGGACAGAGACCTTATCCTGATTTTGACACCATANNNNNNNNNNCAGAAGGGGTTCCATACCCTTATATGGGAGGTGCAAGCACAAGTTCAACCCCTGCTTGGGACTTCACTAGCTCCAATCATCCTGGTAGAACTGACCCAAGATTCATAAGAGGATTTGGTGGGGACCAGACCCCTAGAGCTCGCGATTCGGCCTCGGTTTGTGATGTGGTGTTGGAGGATGAAGGTGAAGCCAAGGAGTGGATGGCACAAGTGGAGCCAGGGGTTCACATCACCTTTGTTTCTCTTCCTAATGGTGGAAATGACCTCAAAAGAATTCGCTTCAGCCGGGAGATGTTCAATAAATGGCAAGCACAAAAATGGTGGGGCGAGAATTATGACAGAATCATGGAACTCTACAACGTTCAGCGATTCAATCGACAATCTCTTAACACTCCTCCAAGATCCGAGGATGAGCCAAGGGATTCTACATACTCAAGATTGACATCGGCGCGAGAAAGCCCTATGGCCTCAAACAGGGATTGGACAACACCAAGGCATCACTATAAACACTTAGATCAAGGTGGTTCTGGCCACCAGTTCCATGGAGCAGGGTCATCCATGGATGCATCAAGGACTACAACCTCTTCTAGAGACGAGCCTTCAGTCAGCAATGCGAGCGAGATGGAGACAGAATGGGTAGAGCAGGATGAGCCTGGAGTCTACATCACAATCAGGCAGTTAGCCGATGGAACGAGGGAGCTTCGACGTGTGAGATTCAGCCGGGAAAGATTTGGGGAGGTAAATGCAAAGACATGGTGGGAAGAGAACAGGGATAGAATACAAGCTCAATACCTTTGA 1029 0.481 MFTCIACTKQTAEEREEEGRESGTPSTKEAVKSLTTQLKDMALKFSGAYKQCKPCTGSSTYKKGQRPYPDFDTIXXXXEGVPYPYMGGASTSSTPAWDFTSSNHPGRTDPRFIRGFGGDQTPRARDSASVCDVVLEDEGEAKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQKWWGENYDRIMELYNVQRFNRQSLNTPPRSEDEPRDSTYSRLTSARESPMASNRDWTTPRHHYKHLDQGGSGHQFHGAGSSMDASRTTTSSRDEPSVSNASEMETEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRDRIQAQYL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90663g00005 342 Pfam Transcription factor BRX N-terminal domain 22 55 IPR027988 -
Stsc90663g00005 342 MobiDBLite consensus disorder prediction 204 284 - -
Stsc90663g00005 342 ProSiteProfiles BRX domain profile. 287 342 IPR013591 -
Stsc90663g00005 342 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 342 IPR044532 -
Stsc90663g00005 342 MobiDBLite consensus disorder prediction 94 120 - -
Stsc90663g00005 342 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
Stsc90663g00005 342 Pfam Transcription factor regulating root and shoot growth via Pin3 286 341 IPR013591 -
Stsc90663g00005 342 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
Stsc90663g00005 342 MobiDBLite consensus disorder prediction 256 284 - -
Stsc90663g00005 342 MobiDBLite consensus disorder prediction 223 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90663g00005 Stsc-Chr90663 31395 37355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90663g00005 1 342 Major Intrinsic Protein MIP AT1G31880 67.688 7.25e-161 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90663g00005 - - ccaj:109789470 573.548