Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90662g00030 ATGACGTCACACCCACTCCACCCCTCCTGCGACTTCGACACAGACTCCGTCGCCTCCTCCCCTCGCTCCGACCACTTCCACGACACCCCTCACCCTCAACGCGTACGCTTCATGTGCAGCTTCGGCGGCAAGATCCTTCCTCGCCCTCACGACAACCAGCTCCGCTACGTCGGCGGAGACACGCGCATAGTTGCCGTCAACCGCTCCATCTCCTTCCCCGCCTTCCTCCTCAAGCTCTCCAAGCTATCAGGCATGACCAATATAACCGCCAAGTACCAGCTTCCCAACGAGGACCTTGACGCCCTTATTTCTGTCACCACCGACGAAGACGTCGAGAACATGATGGATGAGTACGACCGCATCGCACACAATCAAAACCCCCGATCCGCTCGTCTCCGCCTCTTCCTCTTTCCCGAATCCTCCGCCGCCGACGACATTTCCTTTGCCGGCAGCATCGGCTCCCTCCTCAACGGCTCCGTTAAACGGGAGAGCTGGTTCCTCGACGCCCTCAACGGCGGCGTCTCAGCCCTCGAGCGCGGCCGCTCCGAAGCCTCCTCCATGGTCTCGGAGGTCCCCGATTACCTCTTCGGGTTGGACAACTCCGAAGAAACGCCAAGCAACCGTGAATTACGACATAAGGACCGACCCGGTCTATATTCGGATCCGGGTTCCCCTGCCCCGGTTGCGTCTCACTTTTCCTCCACGTCATCGGTGCCGTGTGTGCCGTCTATCCCCAACCTTCCACCGGTTAAAACCAAACTCGCAAACCCTGCTCCCGAAGTGGAGTCCAAGGAGATTCAAATCGAAGCTGAACCGGGTCCGCCACCACAACCGCAACCGAACACGTATCCGGGTAACACTGTTATGCACTACGCCGCGGATGCCTCCTATCCGGGCCATTCTGTTCAACCGGTTCCGGTTTACTATTTTCCCGGTCCGGTTCAACCAGGAACTCTTCCGGTTCACATGCAGGCTCCGTATCCATACGTTCAACAACCATATCATCATGCAGTGGTTCCAGGTCAGGTACCAGTTTCGTACCACCAGTTGGTTCCGGGTTCGGGTCAAACATATGGCACAGGTTTGAGGCATGTAAGCCCGGTGAATCATGCATATAGTACATCTGCCATGGCAGCCGTGGGTCAAGACGGTGTGAAACAGCAGGTGTATCAGGCAGTGCCTGGTTCCGGTTACCCAGCAATGGCAATGACGGGTGGGGATGAACCACAAAGGGGTGGTTCGGAGTTTGTGTCGGGTCGGGTCACCAACTCTCTGAATGAATGA 1284 0.574 MTSHPLHPSCDFDTDSVASSPRSDHFHDTPHPQRVRFMCSFGGKILPRPHDNQLRYVGGDTRIVAVNRSISFPAFLLKLSKLSGMTNITAKYQLPNEDLDALISVTTDEDVENMMDEYDRIAHNQNPRSARLRLFLFPESSAADDISFAGSIGSLLNGSVKRESWFLDALNGGVSALERGRSEASSMVSEVPDYLFGLDNSEETPSNRELRHKDRPGLYSDPGSPAPVASHFSSTSSVPCVPSIPNLPPVKTKLANPAPEVESKEIQIEAEPGPPPQPQPNTYPGNTVMHYAADASYPGHSVQPVPVYYFPGPVQPGTLPVHMQAPYPYVQQPYHHAVVPGQVPVSYHQLVPGSGQTYGTGLRHVSPVNHAYSTSAMAAVGQDGVKQQVYQAVPGSGYPAMAMTGGDEPQRGGSEFVSGRVTNSLNE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90662g00030 427 Pfam PB1 domain 50 138 IPR000270 GO:0005515
Stsc90662g00030 427 CDD PB1_UP2 38 137 - -
Stsc90662g00030 427 Gene3D - 55 138 - -
Stsc90662g00030 427 MobiDBLite consensus disorder prediction 258 284 - -
Stsc90662g00030 427 MobiDBLite consensus disorder prediction 1 17 - -
Stsc90662g00030 427 PANTHER OS05G0427100 PROTEIN-RELATED 14 361 - -
Stsc90662g00030 427 SMART PB1_new 49 139 IPR000270 GO:0005515
Stsc90662g00030 427 MobiDBLite consensus disorder prediction 404 427 - -
Stsc90662g00030 427 MobiDBLite consensus disorder prediction 1 31 - -
Stsc90662g00030 427 MobiDBLite consensus disorder prediction 204 218 - -
Stsc90662g00030 427 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 54 139 - -
Stsc90662g00030 427 MobiDBLite consensus disorder prediction 198 231 - -
Stsc90662g00030 427 SUPERFAMILY CAD & PB1 domains 50 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90662g00030 Stsc-Chr90662 177471 179190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90662g00030 22 186 MAP Kinase Kinase Kinase AT3G46920 42.771 1.21e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90662g00030 - - gmx:100803004 539.65