Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90662g00026 ATGGGAAGACCAAGAGGAAGAGGTATCACTACCCTCCTCTGTTTCTTCCTTTTTTGGATCTCCACTTGTACTTGTTCAGATACCTTAACAAAATCCCAAATCCTAAGAACAAACCAAACCCTCTTGTCCCCAAAGGGAATCTTCCAACTCGGTTTCTTTTCCCCCACCCCTGATGATTCCACCTCCCTGTACCTCGCCATATGGTACAACAACATTCATCCCAAAACACTTGTCTGGGTTGCAAACAGAGACACCCCACTTCAGAGTTCCACAGGGTTTCTCCAAATATCCGAAACAGGAACCATCAACATACTTGTCAACCATTCCTTGAAATCCATATGGTCTTCAAATCAAACAACACAACAACCTCAAAACCCACTTCTCCAGCTCTTGGATTCAGGGAACCTTGTTCTAAGGGACTCAAACGACAACGACCCATCCAAGTATCTATGGCAGAGCTTCGATTACCCTACAGATACTCTCTTACCGGGAATGAAATTGGGTTGGGACTTAGACACAAACACGGAGAAGCACCTCACTTCATGGAAGTTCCAAGACCAAGACCCTTCAACGGGTGATTACTCTTTCAAGATGAACTTCCATGGCCTCCCTGAGTTTTTCCTCTGGAACAAGGACAAGATAACATACAGAAGTGGACCATGGAACGGCGAGAGATTCAGCGGCGTGCCAGAGATGCAACCCGTAACGGATTCAATAAAATTCACATTCCACGTTGATGAACACCAAGTGTACTACACATTCTTCATCGGGAACGAATCCTTGTTCTCCAGACTCTTGGTGAGTTCATCGGGGGAGCTTCAGAGGCTGACATGGATAGAGAGCACGCAGGCATGGAACAAGTTCTGGTACGCTCCGAAGGACCAATGCGACTATTACAGGGAGTGTGGGGCGTACGGCGTTTGCGACACGAATGCGTCGCCGGTGTGCCAGTGTGTGAAGGGGTTCAGGCCGAGGAACCTGCAGGCATGGAATCTTCGGGATGGATCGGATGGGTGTGTTAGGAACAGGGAGTTGGAGTGTGAGAGTGATGGGTTCTGGAAGATGGCGAATGTGAAGTTGCCGGAGACGACGAGGGTGTTTGTGAACCGGAGCATGGGGTTATCGGAATGCGGAGAAGTGTGCAGGAGGAACTGCTCTTGTAGTGGTTATGCGAATGTAGAGATCACCGGTGGGGGCAATGGATGTGTGATGTGGATTGGGGACCTCTTGGATATCAGGCAGTATCCTTCCGGTGGACAAGATCTGTATGTCAGATTAGCAGCTTCTGATTTAGCTGACATAGAATCTGGAGATGGTTCTCACAACACAGCTAAGGTGGTTGGCATTATAGTTGGTGGTGCAGCTTTTATAATTTTGGCATTGGCTATATGTTTCTTGTTATGGAAGAAAAGGAAGTTCCCATGCATGTTGGAGAGGGAGACAGTACATAGAGGTTCTCTGGAAAGAAGTCAGGATTTGTTGATGACTGAAGTGGTTTTTTCAAGTAATAGAGAACAGTCTAGTGAAAGGAAAATCGATGACTTAGAGTTGCCATTGTTTGATTTTAATACCTTAACAATGGCTACAAAGAACTTCTCTGAAGAGAATAAACTTGGACAAGGAGGATTTGGTGTTGTTTATAAAGGCAGGTTGATGGAAGGCCAGGAAATCGCTGTGAAGAGGCTATCAAAAAATTCTGGGCAAGGAGTTGAAGAGTTTAAGAATGAGGTCAAGTTGATTGTCAAACTTCAACACCGGAATCTTGTTCGGCTGCTTGGTTGCAGCATTCAGATGGACGAAAAGGTGCTTGTGTATGAGTACTTGGAAAATAGAAGCCTTGATGGGATTTTATTTAACAAGGCAAAAAGCTCCTCATTAGATTGGTCAAGGCGCTTCAACATTATTTGTGGAATTGCTAGAGGGCTTCTTTATTTGCACCATGATTCCAGATTTAGGATCATCCATAGAGATCTCAAGGCAAGCAACATTCTACTTGACAAAGAAATGAATCCCAAAATATCAGATTTTGGAATGGCTAGAATTTTTAGTACAAATCAAACGGAAGCTAATACAATGAGAGTTGTTGGAACATATGGCTACATGTCCCCTGAATATGCTATGGATGGGATCTTCTCGGTAAAATCAGATGTTTTCAGTTTTGGAGTGTTAGTATTGGAGATTATAACTGGAAAAAAGAACAGAGGATTCTACTATGCAAATGCTGAGTTGAATCTTCTAGGGCATGCATGGAAGCAGTGGAACGAAGGAAATGCATTGGAACTGGTTGATTCATCAATTGACAATTCATATTCATCATCTGAGGTTCTTAGATGCGTACAAGTGGGGCTCTTATGTGTGCAAGAGCGTGCAGAAGACAGACCAACAATGTCTTCAGTGGTCTTGATGCTAAGTAGTGAAACTGCATCAATGCCGCACCCCAAAAACCCTGGGTTTTGCCTGGGAAGGAATCCAATGGAAACTGATTCTTCTTCAAGTAGGCAAGATGAAACGTTCACCGTGAACCAAGTCACAGTCACAATGCTAAATGCCAGGTAG 2556 0.4448 MGRPRGRGITTLLCFFLFWISTCTCSDTLTKSQILRTNQTLLSPKGIFQLGFFSPTPDDSTSLYLAIWYNNIHPKTLVWVANRDTPLQSSTGFLQISETGTINILVNHSLKSIWSSNQTTQQPQNPLLQLLDSGNLVLRDSNDNDPSKYLWQSFDYPTDTLLPGMKLGWDLDTNTEKHLTSWKFQDQDPSTGDYSFKMNFHGLPEFFLWNKDKITYRSGPWNGERFSGVPEMQPVTDSIKFTFHVDEHQVYYTFFIGNESLFSRLLVSSSGELQRLTWIESTQAWNKFWYAPKDQCDYYRECGAYGVCDTNASPVCQCVKGFRPRNLQAWNLRDGSDGCVRNRELECESDGFWKMANVKLPETTRVFVNRSMGLSECGEVCRRNCSCSGYANVEITGGGNGCVMWIGDLLDIRQYPSGGQDLYVRLAASDLADIESGDGSHNTAKVVGIIVGGAAFIILALAICFLLWKKRKFPCMLERETVHRGSLERSQDLLMTEVVFSSNREQSSERKIDDLELPLFDFNTLTMATKNFSEENKLGQGGFGVVYKGRLMEGQEIAVKRLSKNSGQGVEEFKNEVKLIVKLQHRNLVRLLGCSIQMDEKVLVYEYLENRSLDGILFNKAKSSSLDWSRRFNIICGIARGLLYLHHDSRFRIIHRDLKASNILLDKEMNPKISDFGMARIFSTNQTEANTMRVVGTYGYMSPEYAMDGIFSVKSDVFSFGVLVLEIITGKKNRGFYYANAELNLLGHAWKQWNEGNALELVDSSIDNSYSSSEVLRCVQVGLLCVQERAEDRPTMSSVVLMLSSETASMPHPKNPGFCLGRNPMETDSSSSRQDETFTVNQVTVTMLNAR 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90662g00026 851 Gene3D Phosphorylase Kinase; domain 1 505 607 - -
Stsc90662g00026 851 CDD STKc_IRAK 538 803 - -
Stsc90662g00026 851 CDD PAN_AP_plant 345 427 - -
Stsc90662g00026 851 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 497 607 - -
Stsc90662g00026 851 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 184 IPR036426 -
Stsc90662g00026 851 SUPERFAMILY Protein kinase-like (PK-like) 512 803 IPR011009 -
Stsc90662g00026 851 ProSiteProfiles PAN/Apple domain profile. 347 427 IPR003609 -
Stsc90662g00026 851 Pfam PAN-like domain 347 412 IPR003609 -
Stsc90662g00026 851 Gene3D - 21 154 IPR036426 -
Stsc90662g00026 851 Gene3D Transferase(Phosphotransferase) domain 1 608 814 - -
Stsc90662g00026 851 PIRSF SRK 7 851 IPR024171 GO:0004674
Stsc90662g00026 851 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Stsc90662g00026 851 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 154 - -
Stsc90662g00026 851 Pfam Domain of unknown function (DUF3403) 805 851 IPR021820 GO:0004674
Stsc90662g00026 851 SMART blect_4 32 157 IPR001480 -
Stsc90662g00026 851 Pfam Protein tyrosine and serine/threonine kinase 535 801 IPR001245 GO:0004672|GO:0006468
Stsc90662g00026 851 Pfam Receptor serine/threonine kinase 488 522 IPR022126 GO:0004674
Stsc90662g00026 851 ProSitePatterns Protein kinases ATP-binding region signature. 538 560 IPR017441 GO:0005524
Stsc90662g00026 851 ProSiteProfiles Bulb-type lectin domain profile. 26 151 IPR001480 -
Stsc90662g00026 851 Pfam D-mannose binding lectin 76 183 IPR001480 -
Stsc90662g00026 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Stsc90662g00026 851 CDD B_lectin 32 157 IPR001480 -
Stsc90662g00026 851 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 608 811 - -
Stsc90662g00026 851 SMART ntp_6 347 426 IPR003609 -
Stsc90662g00026 851 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 794 - -
Stsc90662g00026 851 ProSiteProfiles Protein kinase domain profile. 532 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90662g00026 851 SMART serkin_6 532 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90662g00026 Stsc-Chr90662 160085 165212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90662g00026 520 851 Receptor kinase-like Gene Family AT4G11530 57.270 5.91e-131 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc90662g00026 PK_Tyr_Ser-Thr 5.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90662g00026 - - gmx:106799702 1308.51