Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90662g00020 ATGGGTGATGAGGAGTTTCAAGGTGCAGGGATTTGCGGCGAGAACTGGTGGAGGAGTAGTGTGTTTCCTCCTTCTTCTTCTTCTCCTTCTCCTCTAAGCTCAACTTCAACACCTTGTTCCGTGGCAGCACCCACCGACACTAGAACTTGGCAAAGTAGTGATCATCTTTGTTTCATGGATTTGAAGGCACCATCGTCATCAACACCAGCATGTGATGATAGCAATAATTACCATATGGGGGGTTTTCATGATGCACAAGCACAACAACAGAAGCCACACAAGAAGACTACTACTACCACCGATGAATCACAAAGTGGTGGAAGCATCTTGATGGATTCAACCTTACAAATGATGGGTTTTGGTTTGTCTTCTTCTTCTTCACCCAATTGGGATCATCACCCATTCTCTCTATTAGATAATAATAATTCAGAAATAATCGAAAAGGATTATTGGAGCAGAAAAAACTTGGGAACCCAACAACAAGTTTCAACAAGTACAATGGATATTTTGAAGCGCATGAATAACCAAGAATTTACATCATCAACGACTTACGGTTACCCATCATCAACAATATATGATCCACAGAACTCCTCATCATCATCATCAACATCACTTTTCACCAACCGTTCCATGTCCTACTCATCATCTTCTACAGTAAATTATGATCATGCCTCCAATGAAGTATCACTGTCACCAATCACATGGCCTCCTAAACTCTCTTCATCTTCTTCTTGTTCTTCTTCTTTATCACTACTACCATCATCAATGGCAAAGCACCCTAACAATAATAATATTGGACTTCACTTTTCCAACAACACCCCTTTCTGGAACGCTTCCGCTGAGTCACTTCACGACATTAGAGCTGGTGCTTTTCCTTCATCACAATCCCAATATAAAACTCCTCCTTTTGAACAACAAGACACCAAACCCATCAATTGCCCCACTATTCTACTCAACAAGCTTAAGAGTGAAGAATTGTGTCATCTGGACTGTGTAAAGAAAAGTAATAATGTATGCTCATCAACACCTGCATTCAAAAGGCCAAGAATTGAGACTCCACCTCCTTTGCCAACTTTTAAGGTTCGGAAAGAGAAGTTAGGGGACCGGGTTACTGCTCTTCAGCAACTCGTTTCACCTTTCGGAAAGACCGACACTGCATCCGTTCTCCACGAAGCCATTGAGTACATCAAGTTTCTTCACGATCAAGTCAGTGTTTTAAGCACTCCATATATGAAAAGTGGAGCTTCCATTCAACGCAGCAATCAGGAATGTGATGATAGGAAAGAGTCATCAGAAGTGGTGGCGGGAAAACAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTGCCAATCTCAAGCACATTCCCGGTGGCTGCTACTGAGGCAAGTGCTGATTTCTGGACGCCCACATTCTCATTCGGAGGAGCACTCTTGAGATAA 1437 0.4252 MGDEEFQGAGICGENWWRSSVFPPSSSSPSPLSSTSTPCSVAAPTDTRTWQSSDHLCFMDLKAPSSSTPACDDSNNYHMGGFHDAQAQQQKPHKKTTTTTDESQSGGSILMDSTLQMMGFGLSSSSSPNWDHHPFSLLDNNNSEIIEKDYWSRKNLGTQQQVSTSTMDILKRMNNQEFTSSTTYGYPSSTIYDPQNSSSSSSTSLFTNRSMSYSSSSTVNYDHASNEVSLSPITWPPKLSSSSSCSSSLSLLPSSMAKHPNNNNIGLHFSNNTPFWNASAESLHDIRAGAFPSSQSQYKTPPFEQQDTKPINCPTILLNKLKSEELCHLDCVKKSNNVCSSTPAFKRPRIETPPPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYMKSGASIQRSNQECDDRKESSEVVAGKQDLRSRGLCLVPISSTFPVAATEASADFWTPTFSFGGALLR 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90662g00020 478 MobiDBLite consensus disorder prediction 91 107 - -
Stsc90662g00020 478 CDD bHLH_AtbHLH_like 356 407 IPR045239 -
Stsc90662g00020 478 MobiDBLite consensus disorder prediction 22 46 - -
Stsc90662g00020 478 FunFam Transcription factor bHLH123 family 360 422 - -
Stsc90662g00020 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Stsc90662g00020 478 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 157 455 - -
Stsc90662g00020 478 Gene3D - 360 424 IPR036638 GO:0046983
Stsc90662g00020 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 360 413 IPR036638 GO:0046983
Stsc90662g00020 478 MobiDBLite consensus disorder prediction 69 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90662g00020 Stsc-Chr90662 107434 110685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90662g00020 4 478 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 37.397 2.24e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90662g00020 - - ahf:112791361 611.683