Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90662g00019 ATGGGAAACCCATATGAAAATAGGCTATCAGTATCTGTGGATGAGTTATATTTCAATGCTGAAAACAGTGGCATCAACAATAGGGGGAGGATGGGAAGGAGGAACTATAATGCTGATGACACAGTAGTGTATAAATCCAAGAACCTTGAGACTGAAAGGAGGAGGAGGCAGAAGCTCAGTGACAGGCTCTTGATGCTGCGCTCCTTAATGAACAAAGCAACCATAATTGAGGATGCCATCACTTACATTAAGAACCTTAAAGACAAAGTTGACAGTCTCACCCTAGAGCTTCAGGAAATAGAAGCAACATCCGAGACACTTGCAGAACCAAAGACTAATCAGACTAATAATGGTGAAGACATGAAAGAATGGGGGATAAAGGAAGAGGTGAGAGTGACCAACATTGATGGAAAGAAGCTGTGGTTGAAGATGATCATCGAGAAGAAGAAGGGAAGATTCACACAGTTGATGGATGTCATTCATTCATTTGGGATAGAGCTTATAGACACAAATATTACAACCATGAAAGGAGCACTCTTGATCACAGCTTCTATACAGGGCATGGATGGTGAAGCACTTGTGGTTCAGCAAACCAAAGAGTTGATGCTAGATATTATCAACTCCACACACACCTATTAA 639 0.4131 MGNPYENRLSVSVDELYFNAENSGINNRGRMGRRNYNADDTVVYKSKNLETERRRRQKLSDRLLMLRSLMNKATIIEDAITYIKNLKDKVDSLTLELQEIEATSETLAEPKTNQTNNGEDMKEWGIKEEVRVTNIDGKKLWLKMIIEKKKGRFTQLMDVIHSFGIELIDTNITTMKGALLITASIQGMDGEALVVQQTKELMLDIINSTHTY 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90662g00019 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 103 IPR036638 GO:0046983
Stsc90662g00019 212 Gene3D - 43 109 IPR036638 GO:0046983
Stsc90662g00019 212 SMART finulus 49 92 IPR011598 GO:0046983
Stsc90662g00019 212 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 27 200 - -
Stsc90662g00019 212 Coils Coil 76 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90662g00019 Stsc-Chr90662 101073 102017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90662g00019 30 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 40.306 2.79e-39 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90662g00019 - - adu:107480552 264.618