Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90662g00013 ATGGACACCATTCCCTTGACTTTGATAATCGGGATTTGCTTAGGCTTTGTGCTTGGTGTAGGTTTCGCACTTTCAATTGCATTATTCTGCTTCAGGTGTACAAGTAACAAGAGCACTTCTCATGGAGCAACAACCACCGTTCCAATCCGTGACTTAGGGGTTGATTCCAGCGCAACATTTTCGGACTCCAATCTTGGTCTTGAGTCTCCCAGAACATCTGTGTGGAGTAACATGCCTTTATGGTTGGAAGGACTTAGAAGGAACAATGTGGTTTCGGCATGTGGAATTCCCAAGTATTCCTGCAAAGACATACAAAAGGCCACTTCTAATTTCACAACCATCATAGGCCATGGAGCATTTGGTCCTGTTTACAAAGCTCAAATGTCCACAGCTGACACGGTTGCGGTTAAAGTTCTTGGGACGGATTCAAGTCAAGGAGAGAAGGAATTCTTGACTGAGGTCCTATTACTTGGAAGATTACATCACAAAAATCTTGTGGGTTTGGTGGGATATGCTGCAGAAAGAGGACAGTATATGCTACTCTACATGTATATGAGCAAAGGCAGTCTTGCTTCTCATTTGTATGGTGAAAACCATGAGCCATTGAGCTGGGATGTAAGACTTAGAATAGCACTGGATGTGGCAAGGGCACTGGAATATCTACACTATGGGGCTACTCCACCAGTTGTACACCGTGACATCAAATCTTCCAACATACTGCTGGATCAGTTCATGAGAGCTAAGGTCACTGACTTTGGCCTTTCCAGACCAGAGAAGATCGGACCTCATACTTCAATTGTCCGGGGAACTTTTGGATATCTAGATCCAGAGTATATGTCTGCAAGAACCTTCACTAAGAAAAGTGACGTTTATAGTTTTGGTGTGCTACTCTTTGAGCTTATTACTGGCAGGAATCCACAGCAAGGTCTCATGGAATATGTACAACTAGCAGCCATGAAAGGTGAGGATATGGTTGGATGTGAAGAAATTGTGGATTCAAAACTGAATGGAAAATATGATGTGCATAAGCTTAACAATATGGCTTCGCTTGCATTCAAATGTGTCAACAAAGTCTCCAAGATCCGGCCTACAACGAGGGAAATAGTTCAAACATTATCTCTGCTTTGCAAGAAAAATAGAAGAAATCACAGCAGAACATCTTTTGCTACATTAAAGGAAGTTTCTATTGAAATGGACAACACAGAAATCCGGGACTTTTCGTCAGTTGAGCGACCAAATGTGCTGTGCAGATTTCATAGCCGATAA 1266 0.425 MDTIPLTLIIGICLGFVLGVGFALSIALFCFRCTSNKSTSHGATTTVPIRDLGVDSSATFSDSNLGLESPRTSVWSNMPLWLEGLRRNNVVSACGIPKYSCKDIQKATSNFTTIIGHGAFGPVYKAQMSTADTVAVKVLGTDSSQGEKEFLTEVLLLGRLHHKNLVGLVGYAAERGQYMLLYMYMSKGSLASHLYGENHEPLSWDVRLRIALDVARALEYLHYGATPPVVHRDIKSSNILLDQFMRAKVTDFGLSRPEKIGPHTSIVRGTFGYLDPEYMSARTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVQLAAMKGEDMVGCEEIVDSKLNGKYDVHKLNNMASLAFKCVNKVSKIRPTTREIVQTLSLLCKKNRRNHSRTSFATLKEVSIEMDNTEIRDFSSVERPNVLCRFHSR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90662g00013 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Stsc90662g00013 421 ProSiteProfiles Protein kinase domain profile. 109 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90662g00013 421 SMART serkin_6 109 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90662g00013 421 Pfam Protein kinase domain 113 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90662g00013 421 Gene3D Phosphorylase Kinase; domain 1 83 184 - -
Stsc90662g00013 421 FunFam calcium/calmodulin-regulated receptor-like kinase 1 185 392 - -
Stsc90662g00013 421 Gene3D Transferase(Phosphotransferase) domain 1 185 399 - -
Stsc90662g00013 421 SUPERFAMILY Protein kinase-like (PK-like) 97 393 IPR011009 -
Stsc90662g00013 421 PANTHER OS01G0750732 PROTEIN 44 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90662g00013 Stsc-Chr90662 61863 64069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90662g00013 95 376 Receptor kinase-like Gene Family AT3G19300 41.724 6.66e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Stsc90662g00013 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90662g00013 - - gmx:100816549 575.089