Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90662g00006 ATGAGTCCTGAAACAAGAATGGGTATTACTGTTACTATTACTATCCTCATCCACATCCAAATCCTGCTCTGCATTCATGCTACTGAAACAGATATACTCTGTTTAAAATCCATCAAAGATTCCTTGGAAGATCCATATAACTACTTAGCCTCGAGCTGGAACTTCAACAACGAAACCGAAGGTTTCGTTTGTGATTTTGTGGGTGTTCGCTGCTGGCACCCCAATGAAAACAGAGTGCTAAGCATCGACCTCTCAAACATGGGGCTCAAGGGCCAGTTTCCGCGGGGACTTGATAACTGCACTTCATTAACTTCCTTAGACCTTTCATCAAACACCTTATGGGCACATCTACCCTCTGATATTCATACGTTACTCCCTTTTGCTGTCTCCATTGATCTTTCCAATAACAAGTTCAGTGGAGAGATTCCACCGTCTTTGGCTAACTGCACTTACCTCAATTCTCTCAAGCTTGATCATAACATGTTCAGTGGTGGAATCCCCGGTCAACTCTCTGCCCTTCCTAGGATTCAAAAACTTTCTTTTGATAACAATGACTTGTCAGGAGAAGTTCCTAACTTGCCATATGGTTCAGTAGTAAGTGTTAGCTATGTTAACAATAGGGGGCTTTGTGGAGGGCCTTTGAAACCATGCTCCTTAGATGGAGGAGGAGGGCTTATTTTTATGAACCAGTGGTTCAAGGATGGCCTTCTTGTTGGTTTTGCATCATCATTCAGTTTTGTTCTTGTGTGCATCTCTTTCCTTTCAAATAGGTACTGGCCAAAATTATTGAAGTGGATCAAACACAATTACCACCACAACAAAGGTGTTGAACTAGTCAAATATTTGTGTTCCATCATCACTGGGAGAAAGCACGGAATTGAAGCTGATCAGATGCCTGGATTGCTATCTATGCAGTTGCAGGAGAAAGGAAGCCAAAAGATAGCTCTACTACTGGAAAGACTAACATCCACTATGAAGTTTGAAGAACTAAATGATGCAACAGATGGCTTTTCTATAAACAATGCAATTGGGTTTGGAAAGATGGGAATAATGTACAAGGGAACATTAGCTAACGGTTGGCACCTAGCTATTAAGAAACTAACCGATTCTCAACGGTTTGGGAGACAAGTTCTTATAGAAATAAGGATTCTAGGTAAGCTCAGACACAGAAACATAGTTCCGTTGCTTGGGTTTTGCGTCGAAAACGATGAAAGGATTCTGGTGTACCCATACTTCTCAAATGGAAGACTCTCGAAATGGTTGCACCCTTTGGATACTGAGGTTCTGATATTGACATGGCCACAGAGGATTAAGATTGCACTTGGTGTGGCCAGAGCTTTATCTTGGCTCCATCATTCATGCAATCTGAATTTGGTGCACTTGAATATTTGTTCACAGAGTATCTTGCTAGATAAGAATTTCGAACCCAAGTTATCCAACTTTGGAGATGCCAAGTTTTTAAACCCCAACAATCATGAGAGTCTAGGCATGCTGTTTTATATAAAGGATGGGAAGAAGGATGTTTATGATTTTGGTAACGTAATTTTTGAGTTGGTCACGGGAAAATCATATGAGGAATTGATGGAGAGTTTATGTAACAATGCCACTCTATCTCCTAATCCTTCAAGTTTTTGTAAGTTTATTATTGGGAAAGGGTTTGAAAGTGAAGCGTTTATGCTCATCAAAGTTGCTTGTGAGTGTGTTCAGCCTTTTCCAGAGCAAAGGCCTACAATGTTTCAAGTCTACAACAAAATGAGCAGTATATGGGAAGAGGGACATGAACTCTGCGGTGATTCTAACAATTGCATGCCATCAGAGGCTTTTTCTGCTACTGATGGTGATGAATTTGTCGAATTATAA 1860 0.4065 MSPETRMGITVTITILIHIQILLCIHATETDILCLKSIKDSLEDPYNYLASSWNFNNETEGFVCDFVGVRCWHPNENRVLSIDLSNMGLKGQFPRGLDNCTSLTSLDLSSNTLWAHLPSDIHTLLPFAVSIDLSNNKFSGEIPPSLANCTYLNSLKLDHNMFSGGIPGQLSALPRIQKLSFDNNDLSGEVPNLPYGSVVSVSYVNNRGLCGGPLKPCSLDGGGGLIFMNQWFKDGLLVGFASSFSFVLVCISFLSNRYWPKLLKWIKHNYHHNKGVELVKYLCSIITGRKHGIEADQMPGLLSMQLQEKGSQKIALLLERLTSTMKFEELNDATDGFSINNAIGFGKMGIMYKGTLANGWHLAIKKLTDSQRFGRQVLIEIRILGKLRHRNIVPLLGFCVENDERILVYPYFSNGRLSKWLHPLDTEVLILTWPQRIKIALGVARALSWLHHSCNLNLVHLNICSQSILLDKNFEPKLSNFGDAKFLNPNNHESLGMLFYIKDGKKDVYDFGNVIFELVTGKSYEELMESLCNNATLSPNPSSFCKFIIGKGFESEAFMLIKVACECVQPFPEQRPTMFQVYNKMSSIWEEGHELCGDSNNCMPSEAFSATDGDEFVEL 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90662g00006 619 Gene3D Ribonuclease Inhibitor 28 218 IPR032675 -
Stsc90662g00006 619 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Stsc90662g00006 619 SUPERFAMILY L domain-like 29 210 - -
Stsc90662g00006 619 Gene3D Transferase(Phosphotransferase) domain 1 412 603 - -
Stsc90662g00006 619 SUPERFAMILY Protein kinase-like (PK-like) 319 583 IPR011009 -
Stsc90662g00006 619 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 34 192 - -
Stsc90662g00006 619 FunFam Nuclear pore complex protein NUP107 28 193 - -
Stsc90662g00006 619 ProSiteProfiles Protein kinase domain profile. 337 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90662g00006 619 Pfam Protein kinase domain 339 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90662g00006 619 Gene3D Phosphorylase Kinase; domain 1 299 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90662g00006 Stsc-Chr90662 27759 29950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90662g00006 21 591 Receptor kinase-like Gene Family AT3G28450 36.650 4.20e-109 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc90662g00006 Pkinase 2.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90662g00006 - - adu:107480601 1033.09