Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90660g00029 ATGAACTTTCCCATCATCATCCTCTTTCTCCTCCTCTTCTTCTTCAACCCTCCTCAAAAGCACCTTATTGTATCATCATCAACCATAGAAGACACATGCTTAGATGCCGTTTGCAACCTAACTGAGCCAGTAATTCGATTCCCTTTCCAAATACAATCAAACTCATCATCATCATGTGGGTATCCAGGTTTCACAGTAACATGCAACAACCGTGGCCAAACACTCCTCAACCTACCTCAATCAGGAGGAGAATTCAGCATCAAAGAAATAGACTACGACACACAACAAGTGTGGGTAAACGACCCTCACAACTGCCTCCCAAAACGAATACTATCTCTCAACCTCACTTCATCCCCGTTCGAAGCCGTTTACAACCAAGAATTCACGTTCTTCAACTGTTCCGTGAACTTGGAGTATCTCAAGTATAGGTACAACCCCATAGCTTGTCTCAGTGATTCAAACCACATGCTTTTCGCAACGGCTTCGTCAAGCGTTGTTGTTTACCTGTCGTCGATTTGTAACGTGGTTAAGAAGGTTAAAGTGCCGGTTGCGGTGCCGTTTTACGAACACGCTGTGTCGTCTAACCTCAGCGATAATTTAAGGTTGTCGTGGGAATGGCCACAGTGTGGGAGGTGTGAGTCGCACGGTGGAAGATGTGGCTTCGAAAGCAACACCACTTCACATGTTGTCTGTTTCAACGATTTCTCTTCAAAAGGGATTTCTCGTGGTGCACAATATGCAATAGGTGTAGGATTAGGAGTACCAGCATTATTGTGCTTCATCGCGATATTGAGTTGCCTCTGCAACAAGCTCAAAATCTTAGCCCACCGTTGGGCCTGGGACAGTCAAACTGTACCTGATTTTGAGCCCCTCATTAGCCCACAACAAACCATCACTTTGGGCCTAGATGGGCCCACTATTGAGTCGTACCCAAAAATGGTTGTGGGGGAGAGCCCAAATCTTCTTCCGAGGCCCAATGATAACACATGCCCAATATGCTTGTCGGAGTACAAGCCCAAAGAGACAGTGAAAAGAATACCTGATTGCCTTCATTGTTTTCACGCTCAATGCATTGACGAGTGGCTTCCATTGAATGCATCTTGCCCAATTTGCCGAACTTCTCCTAACAAGTTACCTGCAGCAGCTTAA 1149 0.4569 MNFPIIILFLLLFFFNPPQKHLIVSSSTIEDTCLDAVCNLTEPVIRFPFQIQSNSSSSCGYPGFTVTCNNRGQTLLNLPQSGGEFSIKEIDYDTQQVWVNDPHNCLPKRILSLNLTSSPFEAVYNQEFTFFNCSVNLEYLKYRYNPIACLSDSNHMLFATASSSVVVYLSSICNVVKKVKVPVAVPFYEHAVSSNLSDNLRLSWEWPQCGRCESHGGRCGFESNTTSHVVCFNDFSSKGISRGAQYAIGVGLGVPALLCFIAILSCLCNKLKILAHRWAWDSQTVPDFEPLISPQQTITLGLDGPTIESYPKMVVGESPNLLPRPNDNTCPICLSEYKPKETVKRIPDCLHCFHAQCIDEWLPLNASCPICRTSPNKLPAAA 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90660g00029 382 Pfam Ring finger domain 328 372 IPR001841 -
Stsc90660g00029 382 CDD RING-H2_EL5-like 330 372 - -
Stsc90660g00029 382 Pfam Wall-associated receptor kinase galacturonan-binding 37 101 IPR025287 GO:0030247
Stsc90660g00029 382 ProSiteProfiles Zinc finger RING-type profile. 330 372 IPR001841 -
Stsc90660g00029 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 377 IPR013083 -
Stsc90660g00029 382 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 375 IPR046948 -
Stsc90660g00029 382 SMART ring_2 330 371 IPR001841 -
Stsc90660g00029 382 Pfam Wall-associated receptor kinase C-terminal 169 233 IPR032872 -
Stsc90660g00029 382 SUPERFAMILY RING/U-box 324 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90660g00029 Stsc-Chr90660 181665 184552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90660g00029 33 376 C3H Transcription Factor Family AT2G46495 36.782 2.12e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90660g00029 - - adu:107460528 701.434