Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90660g00023 ATGCCAATTAGATACTCCTACAAAGACATAAAGAACATTACTAAAAGGTTCAACACTAAACTAGGAAGTGGAGGCTATGGCTCTGTCTTCCAAGGAAAGCTTCGAAGTGGTGGTCTTGTAGTTGTTAAGGTATTGAATAATTCCAAATCCAATGGTCAGGAATTCATCAATGAAGTTGCTACTATTGGAAGAATTCACCATGCCAATGTGGTGCAACTCATTGGTTTCTGTGCAGAGGGATCAAAGCGTGCTTTGATATATGAATTAATGCAAAATGGCTCTTTAGAGAAATATATATTTTCTGCTCAAGAGAGTGCTTCCTTAAGTTGTGAAAAACTGTTCAACATTGCTCTTGGAGTGGCACGTGTGTCTGATTTTGGACTTGCAAGGCTCTATCCCACCGATGCCAGCATTCTGACTCTGACCGCAGCCAGAGGAACTATAGGATGCATGGCTCCTGAGCTCTTCTATAGAAACGTTGGCGTAATCTCATACAAAGCCGATGTTTATAGCTTTGGGATGTTGTTGATGGAAATGGCCAGCAGAAGGAAGAATTTGAATGCAATGACTGAAAATTCCAGCCAAATATATTTTCCCTTTTGGGTTTATGATCAATTGCATGATGGACTGGAAATCACAATAGAGAACGACACAGATGAAGAGATGAAGTTGGCAAAAAGAATGATGATTGTGGCATTATGGTGTATACAAACAAAGCCTAATGATAGGCCTTCAATGAAGAGAGTAGTGGAGATGCTGACACAAGATGATGACTTAGAAATGCCTCCAAAGCCATACTTCTATCGACTTGATGAACCTGCAGATGGAGTTGGAGGAGATAACAGTTCAAGCCTATCCTCTGATATGTCATCAGTTACTGGTTCCAAAGAATAG 894 0.4038 MPIRYSYKDIKNITKRFNTKLGSGGYGSVFQGKLRSGGLVVVKVLNNSKSNGQEFINEVATIGRIHHANVVQLIGFCAEGSKRALIYELMQNGSLEKYIFSAQESASLSCEKLFNIALGVARVSDFGLARLYPTDASILTLTAARGTIGCMAPELFYRNVGVISYKADVYSFGMLLMEMASRRKNLNAMTENSSQIYFPFWVYDQLHDGLEITIENDTDEEMKLAKRMMIVALWCIQTKPNDRPSMKRVVEMLTQDDDLEMPPKPYFYRLDEPADGVGGDNSSSLSSDMSSVTGSKE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90660g00023 297 MobiDBLite consensus disorder prediction 260 297 - -
Stsc90660g00023 297 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Stsc90660g00023 297 Pfam Protein tyrosine and serine/threonine kinase 17 122 IPR001245 GO:0004672|GO:0006468
Stsc90660g00023 297 Gene3D Transferase(Phosphotransferase) domain 1 3 122 - -
Stsc90660g00023 297 FunFam serine/threonine-protein kinase PBS1-like 1 89 - -
Stsc90660g00023 297 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00023 297 Gene3D Transferase(Phosphotransferase) domain 1 123 265 - -
Stsc90660g00023 297 PANTHER RUST RESISTANCE KINASE LR10-RELATED 121 279 IPR045874 GO:0004672
Stsc90660g00023 297 SUPERFAMILY Protein kinase-like (PK-like) 5 268 IPR011009 -
Stsc90660g00023 297 MobiDBLite consensus disorder prediction 279 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90660g00023 Stsc-Chr90660 152750 153743 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90660g00023 4 272 Receptor kinase-like Gene Family AT5G38280 42.671 4.50e-77 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc90660g00023 PK_Tyr_Ser-Thr 2.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90660g00023 - - aip:107607706 459.144