Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90660g00021 ATGCCAATTAGATACTCCTACAAAGACATAAAGAACATTACTAAAAGATTCAACACCAAACTAGGAAGTGGAGGCTATGGCTCTGTCTTCCAAGGAAAACTTCGAAGTGGTCGTCTTGTAGCTGTTAAGGTATTGAATAAGGCCAAATCCAATGGTCAGGAATTCATCAATGAAGTTGCTACTATTGGAAGAATTCACCATGCCAATGTGGTGCAACTCATTGGTTTCTGTGCAGAGGGATCAAAGCGTGCTTTGATATATGAATTAATGCAAAATGGCTCTTTAGAGAAATATATATTTTCTGCTCAAGAAAGTGCTTCCTTATGTTGTGAAAAACTGTTCAACATTGCTCTTGGAGTGGCACGTGGTATTGAGTACCTGCATAATGGCTGCAACATTAAAATTCTGCACTTTGACATCAAGCCTCACAACATTCTTTTGGATGACAACTTCAATCCAAAAATTTCTGATTTTGGACTTGCAAGGCTTTATCCCACTGATACCAGCATTGTGTCTCTGACCGCAGCCAGAGGAACCATAGGGTACATGGCTCCTGAGCTCTTTTATAGAAATGTCGGAGCAATCTCATACAAAGCTGATGTTTATAGCTTTGGGATGTTGTTGATGGAAATGGCCAGCAGAAGGAAGAATTTGAACGCAATGACTAAAAATTCCAGCCAAATATATTTTCCCTTTTGGGTTTATGATCAATTGCATGATGGACTGGAAATCACAATAGAGAACGACACAGATGAAGAGATGAAGTTGGCAAAAAGAATGATGATTGTGGCATTGTGGTGTATACAAACAAAGCCTAATGATAGGCCTTCAATGAGGAGAGTAGCGGAGATGCTGACACAAGATGATGACTTAGAAATGCCTCCAAAGCCATATTTCTATCCACTTGATGAACCTGCAGATGGAGTTGGAGGAGATAACAGTTCAAGCCTATCCTCTGATATGTCATCAGTTACTGGTTCCAAATAA 987 0.3972 MPIRYSYKDIKNITKRFNTKLGSGGYGSVFQGKLRSGRLVAVKVLNKAKSNGQEFINEVATIGRIHHANVVQLIGFCAEGSKRALIYELMQNGSLEKYIFSAQESASLCCEKLFNIALGVARGIEYLHNGCNIKILHFDIKPHNILLDDNFNPKISDFGLARLYPTDTSIVSLTAARGTIGYMAPELFYRNVGAISYKADVYSFGMLLMEMASRRKNLNAMTKNSSQIYFPFWVYDQLHDGLEITIENDTDEEMKLAKRMMIVALWCIQTKPNDRPSMRRVAEMLTQDDDLEMPPKPYFYPLDEPADGVGGDNSSSLSSDMSSVTGSK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90660g00021 328 FunFam PR5-like receptor kinase 90 295 - -
Stsc90660g00021 328 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Stsc90660g00021 328 Gene3D Transferase(Phosphotransferase) domain 1 90 293 - -
Stsc90660g00021 328 MobiDBLite consensus disorder prediction 286 328 - -
Stsc90660g00021 328 MobiDBLite consensus disorder prediction 311 328 - -
Stsc90660g00021 328 SMART serkin_6 15 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00021 328 SUPERFAMILY Protein kinase-like (PK-like) 4 285 IPR011009 -
Stsc90660g00021 328 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 312 IPR045874 GO:0004672
Stsc90660g00021 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Stsc90660g00021 328 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Stsc90660g00021 328 PIRSF ILK 5 289 - -
Stsc90660g00021 328 ProSiteProfiles Protein kinase domain profile. 15 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00021 328 FunFam serine/threonine-protein kinase PBS1-like 1 89 - -
Stsc90660g00021 328 Pfam Protein kinase domain 18 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90660g00021 Stsc-Chr90660 141636 142622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90660g00021 1 325 Receptor kinase-like Gene Family AT1G66910 49.102 1.71e-105 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc90660g00021 Pkinase 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90660g00021 - - aip:107607706 556.984