Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90660g00020 ATGAAACCTTCCAAGATGAAGATATTGTTGGTTCATTTATTGGCGTTGCTCCTATCTTGCGGAAACGGTTACAGCTGGGTAACAGATTCTGGTACGTGTCCCAATCAGCGCTGCGGAACGCATAACATACGCTACCCTTTCACACTAACAAACACTACTAAACCTTACTGCGGTGATCCCACCTTCACCAACTCCCTCTCTTGCGAGACCGAGAACAATCATAGCCAATTGTTTGTTTACTTCAAATCACGAAAATTCTCTGTCCAATCCATTAATTACAGCAACTCTACAATCCGATTAGTAGACGCCGCCATTGTTGATAATTCTTCCTTATTATTCCCTTCTTATTCCCTGGCTTCCTACAATTTCACTCCTTATTACCAATCATATCAATATCATCATAAGCAGATTCTATATCTGACGTGTCCACACACGGTAGAATCTAAAGTTGCTGATGACTCAGCTTGCATCAACGGTTCTTATGCGCCTGGAAGAAGTGGCTTCTTCCATGTGTGCGATGGTAACATGACTCTGCGAGATTTGGGGCTGCAAGACAGGTGTCGCATAGAGTGGATGTATCTAAGTTCATGGCCGGGTGAAGTCAATCACAATGGTGGAAACATCTCTTGCTCAGACATCCGTGCAATGCTGCTTTACGGGTTTGAAATTCCATGGGCCTTGTGTTTTTGCCAAGAAGCTGTCTTTGATTATCAAAACACCAGCCTTCATTGTTTAACTCAGAAGTCACGCACTTTAGTCTTCTTGGTTGGCAAATTTATGCTTGGAGTTGCATTTGTCATTTTCTGCGAATGGCGACAGAAGAACTTAGGCACTTATTACACTATTGAAGATTTTCTGCGAAATAACAATGAAATCTTGCCAATTAGATACTCTTACAAAGACATCAAGAACATAACCAAAGGATTCAAAACAAAATTGGGGAATGGAGGTTATGGCTCTGTCTTTCAAGGAAAACTTCCAAGTGGTCGCCATGTAGCTGTCAAAGTTTTGAATAATAACAACAACACAAGATCTAATGAAGAAGAATTTATCAGTGAAGTTGCAACTATTGGTAGAATTTACCATGCCAATGTAGTGCAACTCATTGGTTTCTGTGTGGAAGGACTAACACGTACTCTTATATATGAGTTAATGGAAAATGGGTCTCTAGAAAAGTACATATTTTCACATGATGAAAAAAGCATTTCCTTAACTTGTGAACAATTGTACAGAATTTCTCTTGGGGTGGCACGTGGCATTGAGTACATGCATAATGGTTGTGACATGAAGATTCTTCACTTTGATATCAAGCCTCAGAACATTCTTCTTGATGAGAATTTCAATCCGAAAGTCTCGGATTTCGGACTTGCGAAGCTGTGTCCGAATGAGAGCAAGGTGTCTTTGTCTGCAGCAAGAGGAACCATAGGATACATGGCTCCTGAACTTTTCTATAGAAACATTGGCACAATCTCTGACAAAGTTGATGTCTATAGTTTTGGGATGTTATTAATGGAGATGGCAAGTAGAAAGAAGAATCTTAATTCAGTGGCTGAAAATTCTAGCCAGATTTATTTTCCTTTTTGGGTTTATAATCAATTACATGATGGAAGTGAAATTGTAATTGAAAATGACACAGGTGAGGAGATGAAGTTGGCAAAGAAAATGATGATTGTAGCATTGTGGTGTATACAAAGCAAGCCTAATGATAGGCCTTCAATGAAGAGAGTTTTGGAGATGCTAGAACAAGATGATGATGAAGAATTGGAAATGCCTCCTAAGCCTTACATATGTTCACATGACATACCTGCACAAGATGTTGGAGATTGTAGCACTTCAGTGCTATTTTCTGATATATCATCATTTAGTGATTCTAAGAAAATTGTATATTCCCCTTAG 1896 0.3929 MKPSKMKILLVHLLALLLSCGNGYSWVTDSGTCPNQRCGTHNIRYPFTLTNTTKPYCGDPTFTNSLSCETENNHSQLFVYFKSRKFSVQSINYSNSTIRLVDAAIVDNSSLLFPSYSLASYNFTPYYQSYQYHHKQILYLTCPHTVESKVADDSACINGSYAPGRSGFFHVCDGNMTLRDLGLQDRCRIEWMYLSSWPGEVNHNGGNISCSDIRAMLLYGFEIPWALCFCQEAVFDYQNTSLHCLTQKSRTLVFLVGKFMLGVAFVIFCEWRQKNLGTYYTIEDFLRNNNEILPIRYSYKDIKNITKGFKTKLGNGGYGSVFQGKLPSGRHVAVKVLNNNNNTRSNEEEFISEVATIGRIYHANVVQLIGFCVEGLTRTLIYELMENGSLEKYIFSHDEKSISLTCEQLYRISLGVARGIEYMHNGCDMKILHFDIKPQNILLDENFNPKVSDFGLAKLCPNESKVSLSAARGTIGYMAPELFYRNIGTISDKVDVYSFGMLLMEMASRKKNLNSVAENSSQIYFPFWVYNQLHDGSEIVIENDTGEEMKLAKKMMIVALWCIQSKPNDRPSMKRVLEMLEQDDDEELEMPPKPYICSHDIPAQDVGDCSTSVLFSDISSFSDSKKIVYSP 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90660g00020 631 ProSiteProfiles Protein kinase domain profile. 307 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00020 631 Gene3D Phosphorylase Kinase; domain 1 286 384 - -
Stsc90660g00020 631 FunFam PR5-like receptor kinase 385 592 - -
Stsc90660g00020 631 Gene3D Transferase(Phosphotransferase) domain 1 385 590 - -
Stsc90660g00020 631 FunFam serine/threonine-protein kinase PBS1-like 281 384 - -
Stsc90660g00020 631 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Stsc90660g00020 631 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Stsc90660g00020 631 Pfam Wall-associated receptor kinase galacturonan-binding 33 102 IPR025287 GO:0030247
Stsc90660g00020 631 Pfam Protein kinase domain 310 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00020 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Stsc90660g00020 631 SUPERFAMILY Protein kinase-like (PK-like) 290 581 IPR011009 -
Stsc90660g00020 631 SMART serkin_6 307 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00020 631 PANTHER RUST RESISTANCE KINASE LR10-RELATED 281 601 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90660g00020 Stsc-Chr90660 137306 140676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90660g00020 34 596 Receptor kinase-like Gene Family AT5G38260 36.913 1.44e-101 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc90660g00020 Pkinase 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90660g00020 - - adu:107460529 970.304