Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90660g00019 ATGTCACCCCTTCTGCTGCTGTTATTGTTCTTGCTATGTTGTGGAAGCATGAGAAGAAGTGATGCAGCAGAAAATTGTTCATCACTATGGTGCGGGAAACACAACATAAGGCCCCCCTTCAGGCTTCAAAACATTAGTCCACAACACTGTGGTGACCATACATACACCCTCTCTTGCGAGGATCATAATAACCAATTGTTCCTCTATTGGAAATCACTCAAGTTCAGTGTTCAATCAATTAACTACAACAACTACACAATCCGATTAGCGGATGCCAATTTTGCTTCACAGCATAATATGCACCAACATCGTCTCTACTCTAAGAACTCTTGCCTTCTCTTTAATTATTCCTTAGGTGTCTACAATTTCATCGATTCTGAAAATGAGCCGTATCGGTATTCGTTAGAGAAATCAAATGGAGGTAGATTTATGCTGATAAAGGAGATGATATATGTGAGGTGCATGAACCACTCTTTGTATGTGAATGTTAATGGCAAGTCTCTGAGGAATTTGGGGCTGGAAGACTCGTGTTATGTAGAGTGGATGTATCCAACGTCTTGGCCTCATGTTGATGAAAGCCAAGTCATCAAGAACATTTCGTGCAGAGACATCCAAAACATGATGCTGTATGGTTTTGAACTTTCTTGGGCGGTTAGTTCTTGCCGCCATAACTTTTGGTACAAAGTCCAGATCGATCATCATAACCACGTTTCTTGTTATTTTAGAGTTCCATTGTTTTCAGCCATATGGAAATGGAGACGGAGGCATTTATCGATGTATAATACTATCGAAGATTTTTTGCAAAGTGACAATAACATCATGCCAATTAGATACTCCTTCAAGGAAATCAAGAACATAACAGCAGCATTCAACACAAAACTGGGGAATGGAGGATATGGCTCTGTCTTTCAGGGAAAACTCCGAAGTGGACGCTCTGTTGCCGTCAAGTTGTTGAACAAGGATAAATCCAATGGACAAGAGTTCATCAGTGAAGTTGCTACTATTGGCAGAATCCACCATGTTAATGTAGTGCAACTTATTGGTTTCTGCATAGAAGGATCAAAACGTGCTCTCGTCTATGAATTGATGAAAAATGGCTCTTTAGAGAAATACATATTTTCCCCTCAAGAGAATACTTCATTAAGTTGCGAAAAGCTCCACACCATTTCTCTTGGAATCGCACGTGGTATTGAATACTTGCATAATGGGTGTGACATGAAGATTCTGCACTTTGACATCAAGCCTCACAACATTCTTTTGGATGAGAATTTCAATCCAAAAGTCTCTGATTTTGGACTTGCAAGGCTCTATCCCACTGATGCCAGCATTGTGTCTTTGACTGCAGCAAGAGGAACCATTGGGTACATGGCCCCCGAGCTCTTCTACAGAAATGTTGGCGCAATCTCATACAAAGCTGATGTCTATAGCTTTGGGATGTTGTTAATGGAGATGGCCTGTAGACGGAAGAATTTGAATGCTATGACTGAAAATTCCAGCCAAATATATTTTCCCTTTTGGGTTTATGATCAATTGGATCATGGAAGAGAAATCACAATAGAAAATGACACAGATGAAGAGATGAAGCTGGCAAAGAAAATGATGATAGTGGCACTGTGGTGTATACAAACAAAGCCTAATGATAGGCCTTCAATGAAGAGAGTAGTGGAGATGCTGACACAAGATGATGACTTAGAAATGCCTCCAAAGCCATACTTCTACCCACTTGATGCACCCACACAAGACAATGTTGAAGATATTACAACCCCTAGCAGTTCAAAGGTATCCTTTGAGATCTGGTCAGCTAGTGATTCAAAGGAATAG 1821 0.4047 MSPLLLLLLFLLCCGSMRRSDAAENCSSLWCGKHNIRPPFRLQNISPQHCGDHTYTLSCEDHNNQLFLYWKSLKFSVQSINYNNYTIRLADANFASQHNMHQHRLYSKNSCLLFNYSLGVYNFIDSENEPYRYSLEKSNGGRFMLIKEMIYVRCMNHSLYVNVNGKSLRNLGLEDSCYVEWMYPTSWPHVDESQVIKNISCRDIQNMMLYGFELSWAVSSCRHNFWYKVQIDHHNHVSCYFRVPLFSAIWKWRRRHLSMYNTIEDFLQSDNNIMPIRYSFKEIKNITAAFNTKLGNGGYGSVFQGKLRSGRSVAVKLLNKDKSNGQEFISEVATIGRIHHVNVVQLIGFCIEGSKRALVYELMKNGSLEKYIFSPQENTSLSCEKLHTISLGIARGIEYLHNGCDMKILHFDIKPHNILLDENFNPKVSDFGLARLYPTDASIVSLTAARGTIGYMAPELFYRNVGAISYKADVYSFGMLLMEMACRRKNLNAMTENSSQIYFPFWVYDQLDHGREITIENDTDEEMKLAKKMMIVALWCIQTKPNDRPSMKRVVEMLTQDDDLEMPPKPYFYPLDAPTQDNVEDITTPSSSKVSFEIWSASDSKE 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90660g00019 606 SMART serkin_6 288 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00019 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Stsc90660g00019 606 Pfam Protein kinase domain 291 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00019 606 Gene3D Phosphorylase Kinase; domain 1 264 362 - -
Stsc90660g00019 606 PANTHER RUST RESISTANCE KINASE LR10-RELATED 260 580 IPR045874 GO:0004672
Stsc90660g00019 606 Pfam Wall-associated receptor kinase galacturonan-binding 26 91 IPR025287 GO:0030247
Stsc90660g00019 606 FunFam serine/threonine-protein kinase PBS1-like 259 362 - -
Stsc90660g00019 606 Gene3D Transferase(Phosphotransferase) domain 1 363 569 - -
Stsc90660g00019 606 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Stsc90660g00019 606 FunFam PR5-like receptor kinase 363 568 - -
Stsc90660g00019 606 ProSiteProfiles Protein kinase domain profile. 288 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00019 606 SUPERFAMILY Protein kinase-like (PK-like) 272 558 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90660g00019 Stsc-Chr90660 130146 132559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90660g00019 277 585 Receptor kinase-like Gene Family AT5G38280 50.000 6.82e-102 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc90660g00019 Pkinase 1.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90660g00019 - - aip:107607706 796.964