Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90660g00018 ATGCCAATTAGATACTCCTACAAAGAAATAAAGAACATGACTAAAAGGTTCAACACTAAACTAGGAAGTGGAGGCTATGGCTCTGTCTTCCGAGGAAAACTTCGAAGTGGTCGTCTTGTAGCTGTTAAGGTATTGAATCAGGCCAAATCCAATGGTCAAGAATTCATCAATGAAGTTGCTACTATTGGAAGAATTCACCATGTTAAGGTGGTCCAACTCATTGGTTTCTGTATTGAGGGATCAAAGCGTGCTTTGGTATATGAGTTAATGCAAAATGGTTCTTTAGAGAAATACATATTTTCTCATCAAGATAATGCTTCCTTAAGTTGTGAAAAGCTGTTCAGCATTGCTCTTGGAGTGGCACGTGGTATTGAGTACCTGCATAATGGCTGCAACATTAAAATTCTGCACTTCGACATCAAGCCTCACAACATTCTCTTGGATGAGAATTTCAATCCAAAAGTTTCGGATTTTGGACTTGCAAGGCTCTATCCCACTGATACCAGCATTGTTTCTCTGACCGCAGCCAGAGGAACCATAGGGTACATGGCTCCTGAGCTCTTTTATAGAAACGTGGGTGCAATCTCATACAAAGCTGATGTTTATAGCTTTGGAATGTTGCTGATGGAAATGGCCAGCAGAAGGAAGAATTGGAATGCATTGACTGAAAATTCCAGCCAAGAATATTTCCCTTTTTGGGTTTATGATCAGTTGCATGATGGAAGGGAAATCACAATAGAAAATGACACAGATGAAGAGATGAAATTGGCAAAGAAAATGATGATTGTGGCATTGTGGTGTATACAGACAAAGCCTAATGATAGACCTTCAATGAAGAAAGTTGTGGAGATGCTGGAACAAGATGAAGACTTATTAGAAATACCCTCTAAGCCTTACTTTTATCCACTTGATGAACCTGCATATGGAGTTGGAGAAGATAACAGTTCAACCCTATCCTCTGATATGTCATCAGTTACTGGTTCCAACAAACAATAG 996 0.3946 MPIRYSYKEIKNMTKRFNTKLGSGGYGSVFRGKLRSGRLVAVKVLNQAKSNGQEFINEVATIGRIHHVKVVQLIGFCIEGSKRALVYELMQNGSLEKYIFSHQDNASLSCEKLFSIALGVARGIEYLHNGCNIKILHFDIKPHNILLDENFNPKVSDFGLARLYPTDTSIVSLTAARGTIGYMAPELFYRNVGAISYKADVYSFGMLLMEMASRRKNWNALTENSSQEYFPFWVYDQLHDGREITIENDTDEEMKLAKKMMIVALWCIQTKPNDRPSMKKVVEMLEQDEDLLEIPSKPYFYPLDEPAYGVGEDNSSTLSSDMSSVTGSNKQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90660g00018 331 MobiDBLite consensus disorder prediction 312 331 - -
Stsc90660g00018 331 PIRSF ILK 4 293 - -
Stsc90660g00018 331 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Stsc90660g00018 331 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 312 IPR045874 GO:0004672
Stsc90660g00018 331 MobiDBLite consensus disorder prediction 311 331 - -
Stsc90660g00018 331 CDD STKc_IRAK 21 287 - -
Stsc90660g00018 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Stsc90660g00018 331 Gene3D Transferase(Phosphotransferase) domain 1 90 294 - -
Stsc90660g00018 331 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Stsc90660g00018 331 SMART serkin_6 15 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00018 331 FunFam serine/threonine-protein kinase PBS1-like 1 89 - -
Stsc90660g00018 331 SUPERFAMILY Protein kinase-like (PK-like) 4 286 IPR011009 -
Stsc90660g00018 331 ProSiteProfiles Protein kinase domain profile. 15 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00018 331 FunFam PR5-like receptor kinase 90 297 - -
Stsc90660g00018 331 Pfam Protein kinase domain 18 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90660g00018 Stsc-Chr90660 127164 128447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90660g00018 4 317 Receptor kinase-like Gene Family AT5G38280 50.157 5.58e-107 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc90660g00018 Pkinase 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90660g00018 - - aip:107607706 557.755