Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90660g00016 ATGTTATCCCTTTGTTCATATTTGGTACCCGTTCTACTGCTGCTGGGGTTCTTCTTAAGTGTTTTCAATATTACTTATGACATCCGGAGTTTGATTACCAACGCAGATAAAAGAACGTGTTCATGTGGGTTGTGTGGGAGGCATGAAATAAGGCACCCTTTGAGGCTGAATAATACTAGTCCAACACCAACCAACTGTGGTGACCACAGGTACACCCTCTCTTGTGAGAATGATAATCAACTCTTTCTCTATCTCAACTCAATCAAGTTTGAAGTGCAGTCGATTAACTACAACAACAACACTATCCGACTAGTAGATGCCAATGTTGCCCTCCATAGGCACCATCACTCTTTTTCCCTTCCTTATTCTTTGACCTCCTCCAATTTCAGCAGAGTGGATCATGAACCATTTCAATATAGCTTGCATACAGGGCAAACTTATGATGTTATTAGATTGACAAAGCAGATGTTATATTTGAGGTGCCCACCATATGGAGTAGAATCTTCTGCTGCTGCAACCTGCATCAATGGCTCTTATGTTCCTGGGAGTACACTCTATGTCAGTGATATTGACAAAACTCTCCAGGAATTGGCAGTGGGAGACTCGTGTGAAATAGAGCGGATGTATCTGACTTCATGGCCTACTGAAATCAAACACAGCAACATTTCATGCACAGCCATCCATCATATGCTGCTCTATGGCTTTGAACTCTCTTGGTTGCAAGCATATTGCAATAATGATGAGGCACACTCAGGCATGATTGGTGGTCATAACAACATCCGCTGTTTTAAAAATCATTACAAGGTCTCTCCACTTCAACCTCAAAACTACCTCCTTTCAATGATTGTTACTTGTCTAATGTATGGAACGATTTTTTTTGTTCTTGGCAAATTTGTACTTGGAGTTCCATGCATCATTATCTTCTGCATATGTAAATCGAGACGAAGACATTTATCGGTATATGACGGTATCGAAGATTTTTTGCGAAGTGATAACAACATTATGCCAATTAGATACTCCTACAAAGACATAAAGAACATGACTAAAAGGTTCAACACTAAACTGGGAAATGGAGGCTACGGCTCTGTCTTTCAAGGAAAACTCCGAAGTGGTCGCTCCGTTGCTGTCAAGTTGTTGAATAAGGATAAATCCAATGGCCAAGAATTCATCAACGAAGTTGCTACTATTGGTAGAATCCACCATGTTAATGTAGTGCAACTTATTGGTTTCTGCATAGAAGGATCAAAACGTGCTCTCTTATATGAATTAATGGAAAATGGCTCTTTAGAAAAATACATATTTTTCCCTAAAGAGAATGCTTCATTAAATTGTGAAAAGCTCTACACCATTTCTCTTGGAATTGCTCGTGGTATTGAATACTTGCATAATGGGTGTGACATGAAGATTCTGCACTTTGACATCAAGCCTCACAACATTCTTTTGGATGACAACTTCAATCCAAAAGTCTCTGATTTTGGACTTGCAAGGCTCTATCCCACTGATGCCAGCATTGTGTCTCTTACTGCGGCAAGAGGAACCATAGGGTACATGGCTCCTGAGCTCTTCTATAGAAACATTGGCGCAATCTCATACAAAGCCGATGTTTATAGCTTTGGGAAGTTGTTTGATGGAAATGGCCAGCAGAAGGAAGAACTGGAATGCCTTGACTGA 1671 0.4034 MLSLCSYLVPVLLLLGFFLSVFNITYDIRSLITNADKRTCSCGLCGRHEIRHPLRLNNTSPTPTNCGDHRYTLSCENDNQLFLYLNSIKFEVQSINYNNNTIRLVDANVALHRHHHSFSLPYSLTSSNFSRVDHEPFQYSLHTGQTYDVIRLTKQMLYLRCPPYGVESSAAATCINGSYVPGSTLYVSDIDKTLQELAVGDSCEIERMYLTSWPTEIKHSNISCTAIHHMLLYGFELSWLQAYCNNDEAHSGMIGGHNNIRCFKNHYKVSPLQPQNYLLSMIVTCLMYGTIFFVLGKFVLGVPCIIIFCICKSRRRHLSVYDGIEDFLRSDNNIMPIRYSYKDIKNMTKRFNTKLGNGGYGSVFQGKLRSGRSVAVKLLNKDKSNGQEFINEVATIGRIHHVNVVQLIGFCIEGSKRALLYELMENGSLEKYIFFPKENASLNCEKLYTISLGIARGIEYLHNGCDMKILHFDIKPHNILLDDNFNPKVSDFGLARLYPTDASIVSLTAARGTIGYMAPELFYRNIGAISYKADVYSFGKLFDGNGQQKEELECLD 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90660g00016 556 SUPERFAMILY Protein kinase-like (PK-like) 332 541 IPR011009 -
Stsc90660g00016 556 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Stsc90660g00016 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Stsc90660g00016 556 FunFam serine/threonine-protein kinase PBS1-like 324 423 - -
Stsc90660g00016 556 Pfam Protein kinase domain 352 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00016 556 FunFam Os07g0541700 protein 424 513 - -
Stsc90660g00016 556 SMART serkin_6 349 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00016 556 PANTHER RUST RESISTANCE KINASE LR10-RELATED 323 541 IPR045874 GO:0004672
Stsc90660g00016 556 Pfam Wall-associated receptor kinase galacturonan-binding 44 106 IPR025287 GO:0030247
Stsc90660g00016 556 Gene3D Phosphorylase Kinase; domain 1 328 423 - -
Stsc90660g00016 556 Gene3D Transferase(Phosphotransferase) domain 1 424 542 - -
Stsc90660g00016 556 ProSiteProfiles Protein kinase domain profile. 349 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90660g00016 Stsc-Chr90660 120847 123289 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90660g00016 20 553 Receptor kinase-like Gene Family AT5G38260 34.539 2.12e-79 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc90660g00016 Pkinase 4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90660g00016 - - aip:107607706 786.949