Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90660g00013 ATGTGTCCGTCTGGGTGGTGTGGGAGGCATGAAATAAGGCACCCTTTCAGGCTGAATAATAGTAGACCGACTCCAACCAACTGTGGTGACCACAGGTACACCCTCTCTTGCGAGAATCATAACCAACTCTTTCTCTATCTCAACTCAGTCAAGTTCCAAGTGCAGTCGATTAACTACAACAACTACACAATCCGACTAGTAGATGCGAGTGTTGCCCTCCATAGCCACAACCACTCTTCTCTCCTTCCTTATTCTTTGACCTCCTCCAATTTCACCACATCAGTGGGTTATGAACCATTTCAATATAGGTTGCATACAGAGAAAACTAAGTTGACAAAACAGATGTTATATTTGAGGTGCCCACCGTTTGGAGTAGAATCTTCTGCTTCTGCGGCCTGCATCAATGGCTCTTATGTTCATGGGGGTACATTATATGTCAGTGATATTAACACAAGTCTCCAGGAATTGGCAGTGGGAGACTCGTGTGAAATAGAGTGGATGTATCTGACTTCATGGCCTACTGAAATCAAATACAGCAACATTTCATGCACAGCCATCCATCATTTGCTGCTCTATGGCTTTGAACTCTCTTGGTTGAAAGCATATTGCGATAATGACACATACTCTGCTGCCAAGATCGGTGATCATAACAACATCCTTTGTTTTAACAGATATGATGAATCCTCTCCGCGATTTATAACTCAATATTTTTTGTTTGTTCTTGCCAAATTTGTACTTGGAGCTCCATGCATCATTATATTCTGCATATGTAAATGGAGACGAAGACATTTATCTGTATATGACGGTATTGAAGATTTTTTGAGAAGTGAAAACAACATTATGCCAATTAGATACTCCTACAAAGACATAAAGAACATTACTAAAACGTTCAACACTAAACTAGGAAGTGGAGGCTATGGCTCTGTCTTCCAAGGAAAACTTCGAAGTGGTCGTCTTGTAGCTGTTAAGGGATCAAAACGTGCCCTCGTATATGAATTGATGGAAAATGGATCACTTGAAAAATACATATTTTCCCCTCAAGAGAATGCTTCATTAAGTTGTGAAAAGCTCTACACCATTTCTCTTGGAATTGCTCGTGGTATTGAATACTTACATAATGGGTGTGACATGAAGATTCTGCATTTTGACATCAAGCCTCATAACATTCTTTTGGATGACAACTTCAATCCAAAAGTGTCTGATTTTGGACTTGCAAGGCTCTATCCCACTGATGCCAGCATTGTGTCTCTGACTGCTGCAAGAGGAACCATAGGGTACATGGCTCCGGAGCTCTTCTATAGAAACGTTGGCGGAATCTCATATAAAGCTGATGTCTATAGCTTTGGGATGTTGCTAATGGAGATGGCCTGTAGACGGAAGAATTTGAATGCAATGACTGAAAATTCCAGCCAAATATATTTTCCCTTTTGGATTTATGATCAATTGCATGATGGAAGGGAAATCACAATAAAAAATGACACAGATGAAAAGATGAAGATGGCAAGGAAAATGATGATAGTGGCATTGTGGTGTATACAAACAAAGCCTAATGATAGGCCTTCAATGAAGAGAGTAGTGGAGATGCTGACACAAGATGATGACTTAGAAATGCCTCCAAAGCCATACTTCTACCCACTTGATGAACCTGTAGATGGAGTTGGAGAAGACAACAGTTCAAGCCTATCCTCTGATATGTCATCATCAGTTACTGGTTCCAAACAATAG 1725 0.4041 MCPSGWCGRHEIRHPFRLNNSRPTPTNCGDHRYTLSCENHNQLFLYLNSVKFQVQSINYNNYTIRLVDASVALHSHNHSSLLPYSLTSSNFTTSVGYEPFQYRLHTEKTKLTKQMLYLRCPPFGVESSASAACINGSYVHGGTLYVSDINTSLQELAVGDSCEIEWMYLTSWPTEIKYSNISCTAIHHLLLYGFELSWLKAYCDNDTYSAAKIGDHNNILCFNRYDESSPRFITQYFLFVLAKFVLGAPCIIIFCICKWRRRHLSVYDGIEDFLRSENNIMPIRYSYKDIKNITKTFNTKLGSGGYGSVFQGKLRSGRLVAVKGSKRALVYELMENGSLEKYIFSPQENASLSCEKLYTISLGIARGIEYLHNGCDMKILHFDIKPHNILLDDNFNPKVSDFGLARLYPTDASIVSLTAARGTIGYMAPELFYRNVGGISYKADVYSFGMLLMEMACRRKNLNAMTENSSQIYFPFWIYDQLHDGREITIKNDTDEKMKMARKMMIVALWCIQTKPNDRPSMKRVVEMLTQDDDLEMPPKPYFYPLDEPVDGVGEDNSSSLSSDMSSSVTGSKQ 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90660g00013 574 MobiDBLite consensus disorder prediction 531 574 - -
Stsc90660g00013 574 Pfam Protein kinase domain 326 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00013 574 MobiDBLite consensus disorder prediction 555 574 - -
Stsc90660g00013 574 SMART serkin_6 295 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00013 574 Gene3D Phosphorylase Kinase; domain 1 274 337 - -
Stsc90660g00013 574 Gene3D Transferase(Phosphotransferase) domain 1 338 540 - -
Stsc90660g00013 574 FunFam PR5-like receptor kinase 334 539 - -
Stsc90660g00013 574 Pfam Wall-associated receptor kinase galacturonan-binding 2 68 IPR025287 GO:0030247
Stsc90660g00013 574 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Stsc90660g00013 574 SUPERFAMILY Protein kinase-like (PK-like) 276 529 IPR011009 -
Stsc90660g00013 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672|GO:0006468
Stsc90660g00013 574 ProSiteProfiles Protein kinase domain profile. 150 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90660g00013 574 PANTHER RUST RESISTANCE KINASE LR10-RELATED 269 323 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90660g00013 Stsc-Chr90660 85465 88223 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90660g00013 3 550 Receptor kinase-like Gene Family AT5G38260 33.882 7.39e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc90660g00013 Pkinase 2.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90660g00013 - - aip:107607706 859.751