Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90660g00008 ATGAAGTTTCAGCAAGACAAGTTTGTTAGGTTTCAGGATTGGAACTCGGAGAAGAGTTCCGAGAGCAACTATCCCGTACTTAATGGAACACGCTCGGGGAGAATCAGAGCCACATTTGGTTCGGTTTCGGAGAAGTTTCAGAGGGGTTTTGAGTCTAGTTCGGAAAGAATAAAGAAACTTAGGAAATCATTCAAATCTTTGCCTTATAACAATGTTCTAGCTAAGAGTTTCAGTTCTGGAAAGAAAATCCTTGATCCGCAGGGTCCTTTCCTTCAAAGATGGAACAAGATCTTTGTATTGTCTTGCCTTATTGCTGTATCACTGGATCCTTTGTTCTTCTATGTCCCCGTGATCGACGATGACAGAAAATGTCTTTCACTGGACAGAAAAATGGAAATTACAGCAACAGTTTTGAGATCTTTCTCTGATATTTTTTATATAATTCACATAATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTCTTTGGAAGAGGGGTTTTGGTTGAAGATTCCTGGGCAATAGCTATGAAGTATCTGTCATCATACTTCCTGGTTGACATTCTTGCCGTTCTTCCCCTCCCACAGGTGGTGATCCTTATCATCATTCCAAAGATGAAAGGCTTTGAATCATTGAATACAAAAAACTTGCTGAAGTTTGTGGTCTTCTTCCAATATGTGCCACGGTTCTTGAGAATAATTCCATTATATAAAGAGGTTACAAGGACTTCTGGCATTCTAACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTATTTCTTTACATGCTTGCAAGTCATAAAGAGAAACCACATGCTGGCAAGAAGCCTGTAGAAGAACCAAGTCCAAATACAACGCTCTTCGATTTTGGAATATTCCTTGATGCCCTTCAATCTGGTGTTGTGGCATCAGAAGATTTCCCACAGAAATTCTTTTATTGTTTCTGGTGGGGCCTTCAGAATTTGAGCTCTCTTGGGCAGAACTTGAAAACAAGTACCTATGTATGGGAAATCTGCTTTGCAATTTTCATTTCTATTGCTGGTTTGGTACTGTTTGCATTTCTCATCGGAAATATGCAGACATATCTGCAATCAACAACTACAAGGTTGGAGGAGATGAGAGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATCGCTTACTCCCCGACAGCCTGAGAGAGAGAATCAGACGACACGAACAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACAATTTGATCCGTGATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTTTGCCTGGCTTTGCTGATGAGAGTTCCAATGTTTGAGAAAATGGATGAGCAACTTTTGGATGCAATGTGTGACCGTCTCAAGCCGGTGCTTTACACAGAAGAAAGCTGCATCGTCCGCGAAGGAGATCCTGTTGACGAGATGCTCTTCATAATGCGAGGAAAGCTATTGACTGTGACAACAAATGGTGGGAGGACAGGCTTCTTTAACTCGGAATACCTAAAGGCCGGAGACTTCTGTGGAGAGGAGCTCCTCACATGGGCACTAGACCCCAATCCCTCATCCAATCTTCCAACCTCAACGAGGACCGTCCAAACTCTTTCGGAGGTAGAAGCATTCGCTCTAAAGGCTGACGACTTGAAGTTTGTTGCATCTCAATTCCGGCGCCTTCACAGCAAGCAGCTTAGACACACTTTCAGGTTCTACTCACAGCAGTGGCGTACTTGGGCTGCTTGCTTCATACAAGCTGCATGGAGGCGGTATAGCAAACGGAAGCTGGAAGAGAGTCTTAGGGAAGAGGAGAATAGGCTGCAAGATGCACTGGCCAAGGCCGGTGGTAGCTCGCCTAGTCTTGGCGCCACAATATATGCTTCTAGATTTGCAGCTAATGCGCTTAGAGCTCTTCGTAGAAATGGTACCAGGAAGAGTAGGGTGCCAGAGAGATTACCACCCATGCTGCTTCAGAAGCCTGCTGAACCAGATTTTACTGCTGAAGAGAGAAATTGA 2028 0.4384 MKFQQDKFVRFQDWNSEKSSESNYPVLNGTRSGRIRATFGSVSEKFQRGFESSSERIKKLRKSFKSLPYNNVLAKSFSSGKKILDPQGPFLQRWNKIFVLSCLIAVSLDPLFFYVPVIDDDRKCLSLDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDSWAIAMKYLSSYFLVDILAVLPLPQVVILIIIPKMKGFESLNTKNLLKFVVFFQYVPRFLRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHKEKPHAGKKPVEEPSPNTTLFDFGIFLDALQSGVVASEDFPQKFFYCFWWGLQNLSSLGQNLKTSTYVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDNLIRDLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPNPSSNLPTSTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRALRRNGTRKSRVPERLPPMLLQKPAEPDFTAEERN 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90660g00008 675 Gene3D Jelly Rolls 443 563 IPR014710 -
Stsc90660g00008 675 FunFam Cyclic nucleotide-gated ion channel 1 443 561 - -
Stsc90660g00008 675 SUPERFAMILY cAMP-binding domain-like 374 567 IPR018490 -
Stsc90660g00008 675 ProSiteProfiles cAMP/cGMP binding motif profile. 445 529 IPR000595 -
Stsc90660g00008 675 MobiDBLite consensus disorder prediction 645 675 - -
Stsc90660g00008 675 Coils Coil 597 617 - -
Stsc90660g00008 675 Gene3D - 97 369 - -
Stsc90660g00008 675 Gene3D Helix hairpin bin 371 436 - -
Stsc90660g00008 675 SMART cnmp_10 445 576 IPR000595 -
Stsc90660g00008 675 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 286 669 - -
Stsc90660g00008 675 Pfam Cyclic nucleotide-binding domain 466 556 IPR000595 -
Stsc90660g00008 675 ProSiteProfiles IQ motif profile. 581 610 IPR000048 GO:0005515
Stsc90660g00008 675 Pfam Ion transport protein 312 372 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc90660g00008 675 Pfam Ion transport protein 93 270 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc90660g00008 675 FunFam Cyclic nucleotide-gated ion channel 1 372 436 - -
Stsc90660g00008 675 CDD CAP_ED 445 576 IPR000595 -
Stsc90660g00008 675 SUPERFAMILY Voltage-gated potassium channels 85 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90660g00008 Stsc-Chr90660 58517 63122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90660g00008 1 673 Ion Channels AT5G53130 75.838 0.0 1087
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90660g00008 K05391 - gmx:100817516 1146.72