Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90660g00006 ATGATGGAGTGCAACAGGGATGAGGCAGTTAGGGCCAAAGAAATAGCTGAGAGGAAATTTTCTGAAAGGGAATATGTTGGCGCAAAGAAGTTTGCTCTCAAGGCTCTAAATCTGTATCCGGCACTGGAGGATCTTCCCCAATTTTTGCAAACAATTGAAATTTATATCTCTGCTGAGAATAAAATTAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGCCCCTTTGCTGATGAAGAGACTGTTAGAAAGCAATACAGGAAGCTGGCCCTCTCTCTCCACCCCGATAAAAACAAGTGTTTAGGTGCAGAGGGTGCATTCAAGCTGGTTTCAGAGGCATGGAGTTTGCTATCAGACAAGACCAAGAGACTAGAATATAACCAAAAGAGGAGTTCAAAAGGTTTTCAACATAACACTTCAAATCATGCTGCATCTCAATCAGATACACCTAGTTCAAATGGTTATTATAATTTCAAGAAGGATAATGTGAGAGCTGGAAACAGTAACTCTCGGAAATCTTCATCTTCAGTGCCACCTACACACAGAAGAGCTGAAACCTTTTGGACTATCTGCAATCGATGCAGGACACATTATGAATATCTGAGGGTTTATTTGAATCATACCCTTTTGTGTCCCAACTGCAATGAAGCTTTTGTAGCTGTGGAGAGGGGTCCACCTCCCAATGTTTTTAAGTCACCAAATTGGTCTTCTCGACAACAGCATCAGGGTTCTAGACATCAATCTGGAAGTAACAACTCGAACTATCAGTGGAGTTCTCAATCTTCCGTTGCAGCTCAAGCTGCAAGTGTTGTGCAACAGGCGAGTGAGAAGGTGAGGAGAGACGGAGCACCATCAATTGCTGAATGGGAAAGGAGTCAAATGTCTAAGAGGAATGATGGTTCTTATTATAATACGAAGAAGAGGAAGACTGATGATTTTCATGTTAATGGTTATCAAGGATATACAGCAAATCAAGGTCATGTAAACTTGGAATCTGAAAGGCATTATGGTTCTTCGGGTATGACTGGCAAGCCATACAGCACAAGAGAATTGTCGATGTATGAATTAAGAAACATGTTGATGGATAAGTCACGGATTGAAATCCGTAAGAAACTACAAGAGTGGAAATCACAAGCTGAAGCCAAGATCGCCAATAAGAGACAGAAAAGCACGGTTACTAGCAAAACCAATGGTAATGGTAATAGGCATGTTGAGGTTGGTGACCCATCTGATGATACAGTTAAGAACCCATCCTATGTTACAATCAATGTTCCGGACCCTGATTTTCACAACTTTGACTTGGATAGAGCTGAAAATTCTTTTGATGAGGACCAGGTTTGGGCTGCGTATGATGATGATGATGGAATGCCTCGATATTATGCTAAGATTCACAAGGTGATCTCCACAAAGCCATTCAGAATGCGGATCAGTTGGCTCAATTCTCGTAGCAACAGTGAATTGGGCCCCATGGATTGGGTAGGGTCTGGTTTCTATAAAACTCTCGGGGATTTCAGAACCGGCAAGCATGAAATAACGGAATCGCTGAACTCATTCTCACACCAGGTTAAGTGGAGCAAAGGGAACAGAGGAGTTGTCCGCATCTTTCCTGGAAAAGGTGAAGTCTGGGCTGTTTATAGAAACTGGTCTCGTGATTGGAATGAACACACCCCAGATGATGTGATACACAAGTATGATATGGTGGAGGTGCTCGAAGATTTCACTGAGGAGCAAGGCGTTATAGTTACCCCCCTTGTCAAGGTTGCTGGTTATAGGACCGTGTTTCNNNNNNNNNNGGATTCCCAAAGAGGAGTTGTTTCGATTCTCACATCAGGTTCCTAA 1842 0.4235 MMECNRDEAVRAKEIAERKFSEREYVGAKKFALKALNLYPALEDLPQFLQTIEIYISAENKISGEMDWYGILGVSPFADEETVRKQYRKLALSLHPDKNKCLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSSKGFQHNTSNHAASQSDTPSSNGYYNFKKDNVRAGNSNSRKSSSSVPPTHRRAETFWTICNRCRTHYEYLRVYLNHTLLCPNCNEAFVAVERGPPPNVFKSPNWSSRQQHQGSRHQSGSNNSNYQWSSQSSVAAQAASVVQQASEKVRRDGAPSIAEWERSQMSKRNDGSYYNTKKRKTDDFHVNGYQGYTANQGHVNLESERHYGSSGMTGKPYSTRELSMYELRNMLMDKSRIEIRKKLQEWKSQAEAKIANKRQKSTVTSKTNGNGNRHVEVGDPSDDTVKNPSYVTINVPDPDFHNFDLDRAENSFDEDQVWAAYDDDDGMPRYYAKIHKVISTKPFRMRISWLNSRSNSELGPMDWVGSGFYKTLGDFRTGKHEITESLNSFSHQVKWSKGNRGVVRIFPGKGEVWAVYRNWSRDWNEHTPDDVIHKYDMVEVLEDFTEEQGVIVTPLVKVAGYRTVFXXXXDSQRGVVSILTSGS 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90660g00006 613 Gene3D DnaJ domain 64 176 IPR036869 -
Stsc90660g00006 613 MobiDBLite consensus disorder prediction 275 309 - -
Stsc90660g00006 613 MobiDBLite consensus disorder prediction 128 180 - -
Stsc90660g00006 613 MobiDBLite consensus disorder prediction 231 260 - -
Stsc90660g00006 613 MobiDBLite consensus disorder prediction 386 404 - -
Stsc90660g00006 613 PRINTS DnaJ domain signature 103 123 IPR001623 -
Stsc90660g00006 613 PRINTS DnaJ domain signature 87 102 IPR001623 -
Stsc90660g00006 613 PRINTS DnaJ domain signature 69 87 IPR001623 -
Stsc90660g00006 613 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Stsc90660g00006 613 MobiDBLite consensus disorder prediction 386 418 - -
Stsc90660g00006 613 Coils Coil 370 390 - -
Stsc90660g00006 613 PANTHER BNAC03G44070D PROTEIN 2 603 - -
Stsc90660g00006 613 CDD DnaJ 67 120 IPR001623 -
Stsc90660g00006 613 Pfam DnaJ domain 67 128 IPR001623 -
Stsc90660g00006 613 SMART dnaj_3 66 123 IPR001623 -
Stsc90660g00006 613 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Stsc90660g00006 613 MobiDBLite consensus disorder prediction 224 260 - -
Stsc90660g00006 613 MobiDBLite consensus disorder prediction 132 180 - -
Stsc90660g00006 613 SUPERFAMILY Chaperone J-domain 63 150 IPR036869 -
Stsc90660g00006 613 Pfam Domain of unknown function (DUF3444) 422 603 IPR024593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90660g00006 Stsc-Chr90660 47579 51814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90660g00006 5 227 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.035 4.83e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90660g00006 - - adu:107460588 1115.14