LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90660g00004	ATGAACTATATGCTTATTCTCATTGCCACTCTCAAGATTATAAAGACGAAGATAAACAAGTTACAAGAGGCAATGGGAGTTCCAACATCACACAGCACTAAAAGGACGATAATTTTCAAATCTAAAGAAGACGCATCAATAACAGATTGTAACGAACGCACTCTGATTCGTAGAAGGGTTCTCATCAATAATTCCTTACCGTATGATTCATGGATGGTGAAGCACCCTTCTGCTTTGCACTCCTTTGACAGATTGATGAAGTCAGCAATGGGGATGAGGATCATCGTTTTCTTAGATTATGATGGCACCTTATCTCCAATTGTCAATGATCCTGATCGAGCTTTCATGTCTGATGAGATGCGTGCGGCGGTTTGTGAAGTTGCTACTTATTTTCCAACGGCAATCATTAGTGGAAGAAGTAGAGAAAAGGTAAAAGATTTTGTGAAGTTAAATAATTTATATTATGCGGGGAGCCATGGAATGGACATTATGGCACCATCAATGGCACTTGAATCTTCTAATGGCAAGCATTATGACATGGCCCTTAATACAACAAAAGGCAATGGAGTTCCCTTTCAACCCGCCAAGAAGTTCTTGCCGGCTATTCAGCAGATAGTTAGAAGATTAGAGAATGAAGTAAAGGATATAAAAGGTGCACGGGTAGAGGACAATGGATTCTGCCTCTCTGTACATTTCAGGCAGGTTCAAGAACAGGATTATGGTGTTTTGGAGAAGAAAGTGAAGCGTGTGCTTGAAGAGAATCCACAATTTCGGTTAAGTGAGGGTAAAAAGGTGTTGGAAATAAGGCCATCCATAGAATGGAACAAAGGCAATGCTGTTGAATATTTTCTTGACATTTTAGGATTAAATACTGCTTCTTCCAACATCCTTCCTCTCTATATTGGAGATGATCGAACTGATGAAGATGCTTTTAAGGTGATAAAGAGAAGAGGGCAAGGGTATCCAATTGTAGTGTCTTCAATTCCAAGAGAGACAAATGCTTTCTACTCTCTACGTGACCCATCAGAGGTCCTAATCTTCTTGACAAAGCTTGCAAAATGGATCAAAACATCTTCCTCTTCTTCTATCTCTAAACCACCATGCCCTTAA	1110	0.3973	MNYMLILIATLKIIKTKINKLQEAMGVPTSHSTKRTIIFKSKEDASITDCNERTLIRRRVLINNSLPYDSWMVKHPSALHSFDRLMKSAMGMRIIVFLDYDGTLSPIVNDPDRAFMSDEMRAAVCEVATYFPTAIISGRSREKVKDFVKLNNLYYAGSHGMDIMAPSMALESSNGKHYDMALNTTKGNGVPFQPAKKFLPAIQQIVRRLENEVKDIKGARVEDNGFCLSVHFRQVQEQDYGVLEKKVKRVLEENPQFRLSEGKKVLEIRPSIEWNKGNAVEYFLDILGLNTASSNILPLYIGDDRTDEDAFKVIKRRGQGYPIVVSSIPRETNAFYSLRDPSEVLIFLTKLAKWIKTSSSSSISKPPCP	369

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90660g00004	369	Gene3D	-	94	190	IPR023214	-
	Stsc90660g00004	369	Gene3D	-	191	364	IPR023214	-
	Stsc90660g00004	369	SUPERFAMILY	HAD-like	95	356	IPR036412	-
	Stsc90660g00004	369	PANTHER	TREHALOSE 6-PHOSPHATE PHOSPHATASE	41	361	IPR044651	GO:0004805\|GO:0005992
	Stsc90660g00004	369	CDD	HAD_TPP	96	344	-	-
	Stsc90660g00004	369	FunFam	Trehalose 6-phosphate phosphatase	94	180	-	-
	Stsc90660g00004	369	FunFam	Trehalose 6-phosphate phosphatase	200	359	-	-
	Stsc90660g00004	369	Pfam	Trehalose-phosphatase	97	342	IPR003337	GO:0003824\|GO:0005992
	Stsc90660g00004	369	NCBIfam	trehalose-phosphatase	93	352	IPR003337	GO:0003824\|GO:0005992
	Stsc90660g00004	369	NCBIfam	HAD-IIB family hydrolase	95	317	IPR006379	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90660g00004	Stsc-Chr90660	29199	32553	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90660g00004	93	366	Trehalose Biosynthesis Gene Families	AT1G23870	26.027	7.41e-08	52.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90660g00004	K01087		-	gmx:100819120	511.916

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