Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90660g00004 ATGAACTATATGCTTATTCTCATTGCCACTCTCAAGATTATAAAGACGAAGATAAACAAGTTACAAGAGGCAATGGGAGTTCCAACATCACACAGCACTAAAAGGACGATAATTTTCAAATCTAAAGAAGACGCATCAATAACAGATTGTAACGAACGCACTCTGATTCGTAGAAGGGTTCTCATCAATAATTCCTTACCGTATGATTCATGGATGGTGAAGCACCCTTCTGCTTTGCACTCCTTTGACAGATTGATGAAGTCAGCAATGGGGATGAGGATCATCGTTTTCTTAGATTATGATGGCACCTTATCTCCAATTGTCAATGATCCTGATCGAGCTTTCATGTCTGATGAGATGCGTGCGGCGGTTTGTGAAGTTGCTACTTATTTTCCAACGGCAATCATTAGTGGAAGAAGTAGAGAAAAGGTAAAAGATTTTGTGAAGTTAAATAATTTATATTATGCGGGGAGCCATGGAATGGACATTATGGCACCATCAATGGCACTTGAATCTTCTAATGGCAAGCATTATGACATGGCCCTTAATACAACAAAAGGCAATGGAGTTCCCTTTCAACCCGCCAAGAAGTTCTTGCCGGCTATTCAGCAGATAGTTAGAAGATTAGAGAATGAAGTAAAGGATATAAAAGGTGCACGGGTAGAGGACAATGGATTCTGCCTCTCTGTACATTTCAGGCAGGTTCAAGAACAGGATTATGGTGTTTTGGAGAAGAAAGTGAAGCGTGTGCTTGAAGAGAATCCACAATTTCGGTTAAGTGAGGGTAAAAAGGTGTTGGAAATAAGGCCATCCATAGAATGGAACAAAGGCAATGCTGTTGAATATTTTCTTGACATTTTAGGATTAAATACTGCTTCTTCCAACATCCTTCCTCTCTATATTGGAGATGATCGAACTGATGAAGATGCTTTTAAGGTGATAAAGAGAAGAGGGCAAGGGTATCCAATTGTAGTGTCTTCAATTCCAAGAGAGACAAATGCTTTCTACTCTCTACGTGACCCATCAGAGGTCCTAATCTTCTTGACAAAGCTTGCAAAATGGATCAAAACATCTTCCTCTTCTTCTATCTCTAAACCACCATGCCCTTAA 1110 0.3973 MNYMLILIATLKIIKTKINKLQEAMGVPTSHSTKRTIIFKSKEDASITDCNERTLIRRRVLINNSLPYDSWMVKHPSALHSFDRLMKSAMGMRIIVFLDYDGTLSPIVNDPDRAFMSDEMRAAVCEVATYFPTAIISGRSREKVKDFVKLNNLYYAGSHGMDIMAPSMALESSNGKHYDMALNTTKGNGVPFQPAKKFLPAIQQIVRRLENEVKDIKGARVEDNGFCLSVHFRQVQEQDYGVLEKKVKRVLEENPQFRLSEGKKVLEIRPSIEWNKGNAVEYFLDILGLNTASSNILPLYIGDDRTDEDAFKVIKRRGQGYPIVVSSIPRETNAFYSLRDPSEVLIFLTKLAKWIKTSSSSSISKPPCP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90660g00004 369 Gene3D - 94 190 IPR023214 -
Stsc90660g00004 369 Gene3D - 191 364 IPR023214 -
Stsc90660g00004 369 SUPERFAMILY HAD-like 95 356 IPR036412 -
Stsc90660g00004 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 41 361 IPR044651 GO:0004805|GO:0005992
Stsc90660g00004 369 CDD HAD_TPP 96 344 - -
Stsc90660g00004 369 FunFam Trehalose 6-phosphate phosphatase 94 180 - -
Stsc90660g00004 369 FunFam Trehalose 6-phosphate phosphatase 200 359 - -
Stsc90660g00004 369 Pfam Trehalose-phosphatase 97 342 IPR003337 GO:0003824|GO:0005992
Stsc90660g00004 369 NCBIfam trehalose-phosphatase 93 352 IPR003337 GO:0003824|GO:0005992
Stsc90660g00004 369 NCBIfam HAD-IIB family hydrolase 95 317 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90660g00004 Stsc-Chr90660 29199 32553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90660g00004 93 366 Trehalose Biosynthesis Gene Families AT1G23870 26.027 7.41e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90660g00004 K01087 - gmx:100819120 511.916