Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90659g00010 ATGGGAATTAATCAACTACACAACACCATCACAACCAAACCTGCTGCTGCTTCTTCTTCTTCAACTTATTCACCTTATTATTATTACTCCATGATTGGTTTTGCTGCTTCATCAGAGAGGAGTAGTGGTGATGGTTTAACCAATCAAGTTAGTGTTGTTGGAGGAGGGTATGCTTCATCTTCATCACTGGTTTTGGATAGGGACAAGGGTGAGTTGGTTGAGGCACCTGTGAAATTAGAGAGAAAGGGTGTGTTCCCTGAGAGAAGCATTGAAGCTTTGAAGAACCACAGTGAAGCTGAGAGGAGAAGAAGAGCTAGAATCAATGCACACCTTGATACACTCAGAACTGTCATCCCTGCTGCTAACAAGATGGACAAAGCATCATTGCTGGCTGAGGTTATTAGGCATCTGAAAGAGCTGAAAAGGAATGCAGCAGAAGCATGTCAAGGCCTAATGATACCAAAGGACAATGATGAAATAAGAGTTGAAGAACAAGAAGGTGGATTGAATGGCTTCCCTTATTCAATAAGAGCTTCTCTATGCTGCGAATACAAACCCGGCTTATTATCTGATATAAGACAAGCACTTGATGCACTCCATCTCATGATAATAAGCGCCGAGATCGCGACGCTAGGAGGCAGGATGAAGAATGTGTTTGTGATAATCAGCTGTGAAGAGCAGAGCTTTGAAGACGCCGAGTACAGGCAGTTCCTTGCCGGATCGGTCCACCAAGCTCTTAGATCTGTTCTTGATAGGTTTTCAGTGTCACAGGACATGTTACAGTCTAGAAAGAGGAGGAGAATTTCTATATTCAGTTCATCATCCTTGGAAGATTTTTTGTAA 843 0.427 MGINQLHNTITTKPAAASSSSTYSPYYYYSMIGFAASSERSSGDGLTNQVSVVGGGYASSSSLVLDRDKGELVEAPVKLERKGVFPERSIEALKNHSEAERRRRARINAHLDTLRTVIPAANKMDKASLLAEVIRHLKELKRNAAEACQGLMIPKDNDEIRVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIISAEIATLGGRMKNVFVIISCEEQSFEDAEYRQFLAGSVHQALRSVLDRFSVSQDMLQSRKRRRISIFSSSSLEDFL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90659g00010 280 SMART finulus 97 146 IPR011598 GO:0046983
Stsc90659g00010 280 PANTHER TRANSCRIPTION FACTOR BHLH30 41 272 IPR045847 GO:0003700|GO:0006355
Stsc90659g00010 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 140 IPR011598 GO:0046983
Stsc90659g00010 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 147 IPR036638 GO:0046983
Stsc90659g00010 280 Gene3D - 87 148 IPR036638 GO:0046983
Stsc90659g00010 280 ProSiteProfiles ACT domain profile. 177 257 IPR002912 -
Stsc90659g00010 280 SUPERFAMILY ACT-like 179 256 IPR045865 -
Stsc90659g00010 280 Pfam Helix-loop-helix DNA-binding domain 95 140 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90659g00010 Stsc-Chr90659 79642 81883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90659g00010 78 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.306 1.13e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90659g00010 HLH 3.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90659g00010 - - lja:Lj3g3v2848980.1 375.941